| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4695 |
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| Symbol | |
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| ID | 5191711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 5260661 |
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| End bp | 5261674 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640589178 |
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| Product | nifR3 family TIM-barrel protein |
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| Protein accession | YP_001269999 |
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| Protein GI | 148549897 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGCGG TACGCATCGG CCAATACACA CTACGTAACA ACCTGATCCT CGCGCCCATG
GCCGGGGTCA CGGACCAGCC TTTCCGTACA CTTTGCCAGC GCCTGGGCGC CGGCATGGTG
GTGTCGGAAA TGGTAAGCAG CGACATGAGC CTGTGGAACA GCCGCAAGTC GAGCCTGCGC
CGCATCCATG AAGGTGATCC CGAGCCACGC TCGGTGCAGA TCGCCGGCGG TGATGCGCAG
ATGATGGCAG CGGCGGCAAA GGCCAATGTC GAAGCGGGTG CCCAGATCAT CGACATCAAC
ATGGGCTGTC CGGCAAAAAA AGTCTGCAAC AAAGCCGCAG GCTCTGCTTT ATTGAGAGAT
GAAGCCTTGG TCAGCGAGAT CCTCCACGCC GTGGTCAGCG CTGTGGACGT ACCGGTGACC
CTGAAAATCC GCACCGGCTG GGACCGGGCG AACAAGAACG GCCTGAACGT GGCGAAGATC
GCCGAACAGG CTGGCATCCA GGCGCTGGCG GTGCATGGCC GCACACGTGC CGATCTGTAC
ACCGGCGAAG CCGAATACGA CACCATCGCT GCCATCAAGC AGGCGGTGTC AATCCCGGTT
TTTGCCAACG GCGATATCAC CTCGCCAGAA AAGGCCCGGG CGGTGCTGGA AACCACCGGG
GTCGATGGCC TGTTGATCGG CCGGGCTGCC CAAGGGCGGC CATGGATCTT TCGCGAGATC
GAGCATTACC TGCGCACTGG CGAACATCTG CCAGCGCCGC AACTGGACGA AGTGGAACGC
ATCCTGCTGG AGCATCTGGC CGCGCTGCAT GCCTTCTATG GCGATGTGAT GGGCGTACGT
ATCGCCCGCA AGCACGTTGG CTGGTACCTG GCAACACGAC CCGGCGGCAA GGAGTTTCGC
GCCCGGTTCA ACGCTTTGGA AGACACACAA GCGCAGTGCG CCAACGTTCG CGCGTTTTTC
AGCGAACGTC GACAGAGCCT TGAGACAGAG GACGGACAAG GGGTGGCCGC ATGA
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| Protein sequence | MSAVRIGQYT LRNNLILAPM AGVTDQPFRT LCQRLGAGMV VSEMVSSDMS LWNSRKSSLR
RIHEGDPEPR SVQIAGGDAQ MMAAAAKANV EAGAQIIDIN MGCPAKKVCN KAAGSALLRD
EALVSEILHA VVSAVDVPVT LKIRTGWDRA NKNGLNVAKI AEQAGIQALA VHGRTRADLY
TGEAEYDTIA AIKQAVSIPV FANGDITSPE KARAVLETTG VDGLLIGRAA QGRPWIFREI
EHYLRTGEHL PAPQLDEVER ILLEHLAALH AFYGDVMGVR IARKHVGWYL ATRPGGKEFR
ARFNALEDTQ AQCANVRAFF SERRQSLETE DGQGVAA
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