Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4671 |
Symbol | holA |
ID | 5194174 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5238143 |
End bp | 5239180 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640589154 |
Product | DNA polymerase III subunit delta |
Protein accession | YP_001269975 |
Protein GI | 148549873 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1466] DNA polymerase III, delta subunit |
TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACTTG CCCCCGCCCA ACTCAACAAG CACCTGCAAG GCGCCTTGGC ACCGGTCTAC GTGGTCAGCG GCGACGACCC GCTGCTGTGC CAGGAAGCCG CCGACGCCAT CCGCAATGCC GCGCGTCAGC AAGGTTTCGA TGAACGCCAG GTATTCAGTG CCGACGCCAA CTTCGACTGG GGCACCCTGC TCCAGGCCGG TGCAAGCCTG TCACTGTTCG CCCAGCGTCG CCTACTGGAA CTGCGCCTGC CCTCGGGCAA GCCCGGTGAC AAGGGTGCCG CCGCCCTGAT GGAATACTGC GCCAACCCCG CCGAAGACAC GCTGCTGCTG ATCAGCCTGC CCAAGCTCGA CAGCAGTGCG CAGAAGACCA AGTGGGGCAA GGCATTGATA GAAGGCGCCC ATTGCCAGTT CATCCAGATC TGGCCGGTGG ATGTGCACCA GCTCCCGCAG TGGATCAACC AGCGCCTGCA ACAGGCCGGC CTGTCGGCCC AGCGTGATGC CGTCGACCTG ATTGCCGCGC GCGTGGAAGG CAACCTGCTG GCAGCCGCGC AGGAAATCGA AAAACTCAAG CTACTGGCCG AAGGCAGCCA GATCACCGTG GAAACCGTGC AGGCTGCCGT CGCCGACAGC GCTCGCTTCG ATGTCTTCGG CCTGGTCGAT GCCATTCTCA ACGGCGAGGC TGCGCATGCC CTGCGCATGC TCGAAGGCTT GCGCGGTGAA GGTGTGGAGC CGCCAGTCAT CCTCTGGGCC TTGGCCCGTG AGCTGCGCCA ACTGGCGGGG CTAGCCCAGC AGTTCAGCCA AGGCGTGCCA TTGGACAAGG CGTTCAGCCA GGCCCGCCCG CCCATCTGGG ACAAACGCCG ACCGCTGGTC AGCAAGGCCC TGCAGCGCCT CTCGGCGCAA CGCTGGGCGC AACTGCTGCA GGATGCCCAG CGAATCGATG CGCAGATCAA AGGGCAGGCT GAAGGTTCGC CGTGGATTGG CCTGGCGCGG CTGTCGCTGT TGATGGCTGG CCAGCGCCTG ACCCTCCCTC CCGAGTAA
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Protein sequence | MKLAPAQLNK HLQGALAPVY VVSGDDPLLC QEAADAIRNA ARQQGFDERQ VFSADANFDW GTLLQAGASL SLFAQRRLLE LRLPSGKPGD KGAAALMEYC ANPAEDTLLL ISLPKLDSSA QKTKWGKALI EGAHCQFIQI WPVDVHQLPQ WINQRLQQAG LSAQRDAVDL IAARVEGNLL AAAQEIEKLK LLAEGSQITV ETVQAAVADS ARFDVFGLVD AILNGEAAHA LRMLEGLRGE GVEPPVILWA LARELRQLAG LAQQFSQGVP LDKAFSQARP PIWDKRRPLV SKALQRLSAQ RWAQLLQDAQ RIDAQIKGQA EGSPWIGLAR LSLLMAGQRL TLPPE
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