| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4623 |
|---|
| Symbol | |
|---|
| ID | 5195546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5184132 |
|---|
| End bp | 5185007 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640589106 |
|---|
| Product | transcriptional regulator-like protein |
|---|
| Protein accession | YP_001269927 |
|---|
| Protein GI | 148549825 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2378] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.2844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000441914 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCA AGCAATCCAT CGAGCAGGTA CGCTGGGACC TGGCACTTCG CTATCGCTTG
ATCGAGACCG TTGCCTGGTG GGAAGGCCGG CTGACCACGG GGCACCTGAT GCAGAGCTTT
GGCATCAGCC GTCAGCAGGC GTCGAAGGAC ATCAACACCT ACATCACCGA ACATGCGCCC
GAAAACTTGA CGTATGACAA GCAGATCAAG GGCTATGTAC CGAGCGAGCA GTTCGAGCCA
CGGTTCATCG ACAACAGCGC AAGCGCCTAT CTGCACCTGC TGTACCAGAA CAATGAGCGC
GCCCCGCACA TCGACGGGCT GGCACTGGCC TATGCACACA CCCGGGTGCT GGAAGTACCC
GATCGCCCAA TCCGGCCAGA GGTGCTGCGC CCCTTGCTCA AAGCCTGCCG TGAAGGCCTG
CGCCTGGAAA CCGAATACGT GTCCTTCAAC ACCCCCAACG TCGAGGTACG CCTGATCGCC
CCGCACACGC TGGTGTACAC CGGCATGCGC TGGCACGTGC GGGCTTATTG CGAAAAGAAC
AGCCAGTACC GCGACTTCGT GCTGAGCCGC TTGCGCGGGC AGCCGGACTT GCTCGACGCA
TCGCCGAACA CGCGTGAGCA GGATGAAGAC TGGAATGTGG AAGTGCCCGT CATCTTCGAA
CCTGATGGGC GGTTGAACGC GGCGCAGAAG GCAATCATCG AAACCGACTT CGGCATGACG
GATGGGCAAT TGGTGGTACC CAGCCGCAGG GCGTTGGTGA AGTATGTGTT GCAGCGGTAT
CAGATCGACC ACCGCAACAT GGCGATACTG CCCGAGGCCC AGCAACTGGT GGTGAGCAAC
CTCCAGGAAC TGCAGCCGTG GTTGATGAAG TACTGA
|
|---|
| Protein sequence | MKRKQSIEQV RWDLALRYRL IETVAWWEGR LTTGHLMQSF GISRQQASKD INTYITEHAP
ENLTYDKQIK GYVPSEQFEP RFIDNSASAY LHLLYQNNER APHIDGLALA YAHTRVLEVP
DRPIRPEVLR PLLKACREGL RLETEYVSFN TPNVEVRLIA PHTLVYTGMR WHVRAYCEKN
SQYRDFVLSR LRGQPDLLDA SPNTREQDED WNVEVPVIFE PDGRLNAAQK AIIETDFGMT
DGQLVVPSRR ALVKYVLQRY QIDHRNMAIL PEAQQLVVSN LQELQPWLMK Y
|
|---|
| |