| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4621 |
|---|
| Symbol | |
|---|
| ID | 5194151 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5182768 |
|---|
| End bp | 5183448 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640589104 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001269925 |
|---|
| Protein GI | 148549823 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.152861 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000000039388 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTG AAGTAGTAGA AAGCAGCTCG TCGTTGATGA AGATGGTGGA AGCCATCGCC
ATTAGTCCCC AAGATGCGCG GGAGCTGGTC GCCCAGTACC AGGCGCAGGC GCGCAAGGCC
TCGCCGTCTG CCTCGGAGCA GAAAATCGAG GACGCGGTGG TCGACAAGAT TATCAGCCGC
TACTCAAAAT TGGCCGCCAC CTCTGGTGCT GCCACTGCAC TGCCGGGTGT TATCCCGGGT
ATCGGAACCG CGGTGAGTGC TGTGGGCGGC GGGCTGGCGG ACATTTCGGT GTGCATGAAG
CTTCAGATTG ATATGACGAT GTGCCTGGCG GTGGCGATCA ACGGGAAGAT GTCCAATGAG
GACGCCAAGC ACATGTCGTA CATCATCGCC CTCTACGGTT CGCTGGAGCA GATGGGGACT
ACGGGAACGA CCCGAATCGC CAGCAAAGCC GGGGTGCGGA TGGTCAAGAA GTACCTCACG
GGTCCGGTTT TGCAAGTGAT CAAGGATTTG TTCAAGAAGA TCGGGATTAC GTTCACCCAG
AAGGCTGCCG CTAAAGTGAT TCCATTTGGG ATTGGGGTTG TAGTGGGGGG CACGGCGAAT
TATGCGTTGA CGAAGTATGT GGGGAAGACT GCTCGGGATA CGTTTCGGCT GAGCCTTAAA
GAAGAGGGTG TTGCGGACTG A
|
|---|
| Protein sequence | MTTEVVESSS SLMKMVEAIA ISPQDARELV AQYQAQARKA SPSASEQKIE DAVVDKIISR
YSKLAATSGA ATALPGVIPG IGTAVSAVGG GLADISVCMK LQIDMTMCLA VAINGKMSNE
DAKHMSYIIA LYGSLEQMGT TGTTRIASKA GVRMVKKYLT GPVLQVIKDL FKKIGITFTQ
KAAAKVIPFG IGVVVGGTAN YALTKYVGKT ARDTFRLSLK EEGVAD
|
|---|
| |