| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4620 |
|---|
| Symbol | |
|---|
| ID | 5194150 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5179356 |
|---|
| End bp | 5181944 |
|---|
| Gene Length | 2589 bp |
|---|
| Protein Length | 862 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640589103 |
|---|
| Product | ATPase |
|---|
| Protein accession | YP_001269924 |
|---|
| Protein GI | 148549822 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1401] GTPase subunit of restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00433872 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000000142009 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAGA CGGGCAAAGC CCCAACCACG GCCAATAATT ATGCCAGTGG TGTTAACACT
GTTTCGAACG ATTATGGTCG AGACGTGTTT GAAATTGACA GCATCGATGA CCTCGAACAG
GTTTATCAGA TCTACAGCCC AGGAGGGGCG CGCGCAGCAA TCGGTGGCAG CAATAGCGGT
AATGTTTATA ACGGCCTCAA GCAGTGGCTG GAGTTTCGGC GTACTCAGCT TCAACTGAGT
CCTGGTCTAG CGCCGATGGA TCTTGAAGGC TATGCCGATC CTCGGGTACG ACAGCTGCTG
AACAAAGGCA CTGCGCATGA GCAGGCATGG GTGCGGACGT TGTTGGGCAT TATGCGCCAA
AGCTACCCGC AGGCTGATCA CTGGACGGTA AACGTCAACC CCTCGGACAT TCGTATCGGT
GTTCGACAAC TGAACGCCCT GAAAGGCAAG CCCGTATTCA GCTTGTATTG GGACTGGGGC
AAGATTCGCT GTTCGCTGCG AAAGGTTGCA GACCATCGAG AGTTGATGGA AGCCGCCGGC
CTGGCCTGGG AAATTGAGTC AGATGCGTGC CCAACCCCGA CGGAGATCAA GGAGTGGCTC
GATTCCGTTG ACGAAGTACT CGGGGAGAGG GAATTGACGC TCGGCGGATC GGGTTTTGTG
CCCCTTGATT ATCATCACTC CGAGCAAGAG GAGTCCACTG TGACGACAGC CGCCCCAGTA
CCTGCGCTTA ACCAGATCCT GTTTGGGCCA CCCGGTACCG GTAAAACCTA CGCCACCATC
GACAGTGCTT TGAAGGTGCT CGACCCTGCA TACCTTGACG AGCAGTTGGA CAATCGCGAG
GCACTTAAGC AGCGCTTCGA CGAGCTGGTG GAACAAGATC GCATCCGTTT TGTCACCTTC
CACCAGAGTT TCAGTTACGA AGACTTCGTT GAAGGGCTGC GAGCGACCAC TGACGAAGCA
ACTCAGCAGC TGCGGTATGA GGTGGTGGAC GGGGTGTTCA AATCACTCTG TGAGGCGGCG
GCAGCCAAGG TTACTCAGCA GGCTGAGGCA CCGACCGAAG TTGGCCAACG ACGCATTTGG
AAAATGTCGT TGGGCAACAC TCTGGGCGAA GACGCCAGCA TTTATCAGGA GTGCCTGGCG
GGTGATTACG TGTTGCTGGG CTACGGTGAT GCTATCGACT TTTCAGGGTG CACGAGCCGC
CAGCAAGTCC AAGAGCGCTT TGCTGCAGTC GGTGTGAAAC CTGAAAGCCC GGCGACGGAC
TATGGCATCA CCAGCGTGAC CGCTTTCGTC GCGCGGATGA AAGTGGGCGA CCTGATTGTC
GTGTCTGATG GCAATTTTAA GTTCCGGGCG ATTGGTGAGG TGACAGGGGA CTACCTGTTC
AAGCCGCACG CCGAGTATGA GGCTGGCTAT TCGCAAATGC GCCCGGTGAA ATGGTTGCGC
CAATACCAGC CGTCACTGCC TCACACTGAG TTGCTCAATG GGCAATTCAG CCAGATGACC
CTTTACGAGC TGAAAGCACC AACCCTGAAC CGAGACAAGC TTAAAGCGCT ACTCGGTACT
CCCGAAGTGG GCCCCGGTGC TTTGCTACAC GTGGGGCAGC GTTTTAGCCA AGGCTATGTA
GTGCGCAGCG TTGGGCAGGA ATTGGTGGAG TTGGACAAGC CCAAGGGCGG CGTACTACCG
CTGCCATTGA GCTTGTTGCG GCAGCTGCTG GTCTATGTGC GAACTGGCCA AATTACCGTT
GAAGATATCC GGCGTGGGCG AGTGTTTGAG AAGGTCCCCG AAGCCGAAAT GGAAAAGCAC
ATGGTTAACG GCTACCAACA TGTGTTTGCA CCGATGGTTG AGCAGCTTTT GAAACCGCAA
GCGAGCAGCG CGGTGACTGA CGCTCGCGTG CTGATCATTG ATGAAATTAA CCGGGGCAAT
ATTTCGCGCA TTTTCGGTGA GTTGATCACG CTGATCGAAC CCTCCAAGCG TGCTGGCGAA
GAAGAGGCGC TGTCGGTAGT TTTGCCCTAC TCCAAGCAGC GCTTCAGCGT GCCCAGCAAC
CTGCATTTGA TCGGCACCAT GAACACCACC GACCGTTCCT TGGCCGGGTT GGATATGGCG
CTGCGCCGTC GCTTTGTTTT CCAGGAGATG CCACCACGTC CTGAGCTACT AGACGATGTA
GTAGTGCAGG GGCTGAACAT TGGCCAACTG TTGCGCGTGA TGAATCAGCG CATAGAAGTA
CTGCTGGACC GCGATCACTG CCTGGGGCAC GCCTATTTCA TGCCGCTTCA GGACGATGGG
TCGCTGGAGC ATTTGGAGGC AATCTTCCGC AGCCAGATTC TGCCGCTGCT ACAGGAGTAT
TTCTTCGAGG ACTGGCAGCG CATTCAGTGG GTTTTCAATG ACCATCGTAA GCTATCAGTC
GACCGCTTCG TAGTGCCGGA TGAGCAGGAT TTGACAGCGC TTTTTGGTGA CATCAGCGTG
CCGGCGCAAG GCCCGACCTG GCGCATTAAC CATGAAGCCT TTAAGCGTAT ATCTGCCTAC
TTCGGCGTCA TCGCGGCAAA TACCAAGGTC GTGATGCCTG CTGAGGTATT TGAGGAGTCG
GGCGCGTGA
|
|---|
| Protein sequence | MIETGKAPTT ANNYASGVNT VSNDYGRDVF EIDSIDDLEQ VYQIYSPGGA RAAIGGSNSG
NVYNGLKQWL EFRRTQLQLS PGLAPMDLEG YADPRVRQLL NKGTAHEQAW VRTLLGIMRQ
SYPQADHWTV NVNPSDIRIG VRQLNALKGK PVFSLYWDWG KIRCSLRKVA DHRELMEAAG
LAWEIESDAC PTPTEIKEWL DSVDEVLGER ELTLGGSGFV PLDYHHSEQE ESTVTTAAPV
PALNQILFGP PGTGKTYATI DSALKVLDPA YLDEQLDNRE ALKQRFDELV EQDRIRFVTF
HQSFSYEDFV EGLRATTDEA TQQLRYEVVD GVFKSLCEAA AAKVTQQAEA PTEVGQRRIW
KMSLGNTLGE DASIYQECLA GDYVLLGYGD AIDFSGCTSR QQVQERFAAV GVKPESPATD
YGITSVTAFV ARMKVGDLIV VSDGNFKFRA IGEVTGDYLF KPHAEYEAGY SQMRPVKWLR
QYQPSLPHTE LLNGQFSQMT LYELKAPTLN RDKLKALLGT PEVGPGALLH VGQRFSQGYV
VRSVGQELVE LDKPKGGVLP LPLSLLRQLL VYVRTGQITV EDIRRGRVFE KVPEAEMEKH
MVNGYQHVFA PMVEQLLKPQ ASSAVTDARV LIIDEINRGN ISRIFGELIT LIEPSKRAGE
EEALSVVLPY SKQRFSVPSN LHLIGTMNTT DRSLAGLDMA LRRRFVFQEM PPRPELLDDV
VVQGLNIGQL LRVMNQRIEV LLDRDHCLGH AYFMPLQDDG SLEHLEAIFR SQILPLLQEY
FFEDWQRIQW VFNDHRKLSV DRFVVPDEQD LTALFGDISV PAQGPTWRIN HEAFKRISAY
FGVIAANTKV VMPAEVFEES GA
|
|---|
| |