| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4547 |
|---|
| Symbol | |
|---|
| ID | 5193369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 5084689 |
|---|
| End bp | 5087010 |
|---|
| Gene Length | 2322 bp |
|---|
| Protein Length | 773 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640589027 |
|---|
| Product | penicillin-binding protein 1B |
|---|
| Protein accession | YP_001269851 |
|---|
| Protein GI | 148549749 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | [TIGR02071] penicillin-binding protein 1B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.428177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000222687 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGAA CCCGAAATTC CCGCACCCCT CAGAAACGCC CGACCGGCCG CTCCCGCGCC
TGGCTGGGCT GGGCTTTGAA GCTCAGCCTG GTTGGCCTGG TGATCGTCGC CGGCTTCGCG
GTTTACCTCG ATGCCGTCGT CCAGGAAAAG TTCTCCGGCA AGCGCTGGAC CATCCCGGCC
AAAGTGTATG CCCGACCGCT GGAGCTGTTC ACCGGCCAGA AGTTGAGCAA GAACGACTTC
CTCACCGAGC TCGATGCGCT CGGCTACCGT CGCGAAAACG CGGCCAACGG CCCGGGCGCT
GCGTCCGTCA GCGGCAATAC CGTCGACCTC AATACCCGTG GCTTCCAGTT CTACGAGGGC
ATGGAGCCGG CGCAGTTCGT CCGTGTACGC TTCTCTGGCG ATTACGTTGC GGGCCTTTCC
GGTGCCAACG GCAAGGCGCT TGACGTGGTG CGGCTGGAGC CGCTGATGAT CGGCGGCATC
TATCCGAAAA ATCTCGAAGA CCGCATCCTG ATCAAGATCG ATCAGGTACC CAAATATCTG
CTCGAAACCT TGGTGGCCAC GGAAGACCGC GAGTTCTACA GTCACTTCGG CGTGTCGCCA
AAGTCCATCG TCCGGGCCAT GTGGGTCAAC ACGTCGTCCG GCTCGATGCG CCAGGGTGGC
AGTACCCTGA CCCAGCAGTT GGTGAAGAAC TTCTACCTCA GCAGCGAGCG CAGCCTCAGC
CGCAAGCTGA CCGAGGCGAT GATGGCGGTC CTGCTCGAAC TGCACTACGA CAAGCGCGAA
ATCCTTGAGG CTTACCTCAA CGAGGTGTTC GTCGGCCAGG ACGGTCAACG CGCGGTGCAC
GGCTTTGGTC TGGCGAGTCA GTTCTTCTTC AGCCAGCCGC TGTCCGAGCT GAAACTGCAT
CAGATCGCCC TGCTGGTGGG CATGGTCAAA GGCCCGTCCT ACTACAACCC GCGGCGTCAC
CCCGAGCGTG CCTTGGCTCG CCGCAACCTG GTGCTCGACC TGGTGGCCGA GCAGGGCGTG
GCCAGCCAGG CAGAAGTCGA TGCGGCGAAG AAAATGCCGC TGGGCGTGAC CAAGCGTGGC
AGCCTGGCCG ACAGCTCGTT CCCTGCCTTC CTCGACCTGG TCAAGCGACA GTTGCGCCAG
GATTACCGCG ACGAAGACTT GACCGAAGAA GGCCTGCGCA TCTTTACCAG CTTCGACCCT
ATCCTGCAGA TGAAGGCCGA AACCTCGATG AGCGAGACCT TCAAGCGCCT GGCGGGCCGC
AAGGGGGCAG ACGATGTCGA GGCGGCAATG GTCGTGACCA ACCCTGAAAC CGGTGAAGTA
CAAGCGCTGA TCGGTAGCCG CCAGGCAGGT TTTGCCGGCT TCAACCGGGC CATCGATGCT
GTACGGCCGA TCGGCTCCCT GGTCAAACCG TCGGTATACC TGACTGCGCT GGAGCAGCCG
AGCAAGTACA CCCTGACCAG TTGGGTGCAG GACGAGCCAT TTTCGGTCAA AGGGGCTGAC
GGCCAGGTCT GGCGCCCGCA AAACTATGAC CGCCGCCCGC ATGGCACGAT CTACCTGTAC
CAGGGGCTGG CCAACTCTTA CAACCTGTCG ACCGCCAAGC TCGGCCTGGA AGTGGGTGTG
CCGAACGTGA TCAAGACCAT TGGTCGCTTG GGCGTGAATG TCGACTGGCC AGCGTTCCCG
GCCATGTTGC TGGGGGCGGG TGGCATGTCG CCGATGCAGG TCGCAACCAT GTACCAGACC
ATCGCCAACG GCGGCTTCAA CACGCCGATG CGCGGTATCC GCAGCGTGCT CACCGCCGAG
GGCGAGCCGC TCAAGCGCTA CCCGTTCCAG ATCCAGCAAA CCTTCGACCC GGGTGCCATT
TACCTGGTGC AGAACGCCAT GCAGCGTGTA ATGCGCGAAG GTACAGGGCG TTCGGTGTAC
AACACCTTGC CACGCTCGCT GACCCTGGCG GGCAAGACCG GTACCAGTAA CGACTCGCGT
GACAGCTGGT TCTCCGGCTT CAGTCAGGAT CTGCTGGCCG TGGTGTGGAT GGGCCGTGAC
GATAACGGCA AGACACCGTT TACCGGCGCC ACCGGCGCCT TGCAGGTGTG GACCAGCTTC
ATGAAGAAGG CCGACCCGCT GCCGCTGGAT ATGCCGCAAC CTGACAACGT GGTGCAGGCC
TGGATCGACC CCTACAGTGG CCATGGGTCT GATGCCAGCT GTCCGGGAGC GGTGCAGATG
CCGTATATTC GCGGGAGTGA GCCGCCGGCC GGCGCAACCT GTGGCGGCGA GCAGGACCCA
GTCGAATCGG TCATGGACTG GGTCAAGGGC TGGATGAATT AA
|
|---|
| Protein sequence | MTRTRNSRTP QKRPTGRSRA WLGWALKLSL VGLVIVAGFA VYLDAVVQEK FSGKRWTIPA
KVYARPLELF TGQKLSKNDF LTELDALGYR RENAANGPGA ASVSGNTVDL NTRGFQFYEG
MEPAQFVRVR FSGDYVAGLS GANGKALDVV RLEPLMIGGI YPKNLEDRIL IKIDQVPKYL
LETLVATEDR EFYSHFGVSP KSIVRAMWVN TSSGSMRQGG STLTQQLVKN FYLSSERSLS
RKLTEAMMAV LLELHYDKRE ILEAYLNEVF VGQDGQRAVH GFGLASQFFF SQPLSELKLH
QIALLVGMVK GPSYYNPRRH PERALARRNL VLDLVAEQGV ASQAEVDAAK KMPLGVTKRG
SLADSSFPAF LDLVKRQLRQ DYRDEDLTEE GLRIFTSFDP ILQMKAETSM SETFKRLAGR
KGADDVEAAM VVTNPETGEV QALIGSRQAG FAGFNRAIDA VRPIGSLVKP SVYLTALEQP
SKYTLTSWVQ DEPFSVKGAD GQVWRPQNYD RRPHGTIYLY QGLANSYNLS TAKLGLEVGV
PNVIKTIGRL GVNVDWPAFP AMLLGAGGMS PMQVATMYQT IANGGFNTPM RGIRSVLTAE
GEPLKRYPFQ IQQTFDPGAI YLVQNAMQRV MREGTGRSVY NTLPRSLTLA GKTGTSNDSR
DSWFSGFSQD LLAVVWMGRD DNGKTPFTGA TGALQVWTSF MKKADPLPLD MPQPDNVVQA
WIDPYSGHGS DASCPGAVQM PYIRGSEPPA GATCGGEQDP VESVMDWVKG WMN
|
|---|
| |