| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4537 |
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| Symbol | |
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| ID | 5194497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 5063737 |
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| End bp | 5067411 |
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| Gene Length | 3675 bp |
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| Protein Length | 1224 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640589012 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_001269841 |
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| Protein GI | 148549739 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.227788 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.354601 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGG ACCGTCCTCT GGCACTGAGT TTCCCCCTGC ACGGTAGCCA GCTGATCGAG
GCCAGCGCCG GCACGGGCAA GACCTTCACC ATTTCGGCGC TGTACCTGCG CCTGATCCTC
GGTCACGGTG GCGAACAGGG CTTCGAGCGC GAGCTGCTGC CACCGCAGAT CCTTGTGGTG
ACCTTCACCG ACGCCGCGAC CAAAGAGCTG CGCGAGCGTA TCCGCGCCCG CCTGGCTGAA
GCCGCACGGT TCTTCCGTGG CGAGCTGGAA GGCGCCGATC CGCTGTTGCA CCAACTGCGT
GACGATTACC CACAAGAGAC TTGGCTGCGT TGCGCCGGCC GGTTGGAAAT CGCCGTGCAG
TGGATGGACG AGGCTGCGGT ATCGACCATC CATGGCTGGT GCCAGCGCAT GCTGCGCGAG
CATGCCTTCG ACAGCGGCAG CCTGTTCACC CAGACCCTGG AAACCGACCA CAGCGAGTTG
TTGGGCCAGG TCATGCGCGA TTACTGGCGG CGCTTCTGCT ATGGGATGCA AGGTGACGCA
CTGGCCTGGG TGCGCGGCAA CTGGGGGAGT CCAGACGCCT TGCTGCCGCG CATTCGCCCA
CTGTTCGGCC GTGTGCGCGC CCAGCAGGAT GGGCCAGAGC CCGCCGCATT GATCCAGGCA
TCGCTGCAGC AACGTGGTGC ACAGTTGGCC CGGATCAAGG CGCCATGGGC ACAGTGGGCC
GAGGAACTGC GGCAAATCTG CCGCGATGCG CTGGCCGCCA AACAGGTCGA CGGCCGCAAG
ATGCAAGCCC GTTACTTCGA GCCCTGGTTC GACAAGCTCT GCGCTTGGGC CAGCGATGAG
CAACTGGTAG AGCTCGACTT GGGCACCGGC TTTACCCGGC TGACCCCGGC GGGCATGGCC
GAGGCCTGGA AGGGAGAACC TCCCGAGCAC CCAGCCCTCA ACGCCATGCA GCACTTGCAG
CAACAACTGC AGGCCCTGGA CAGCCCGGAT GCCCCTCTGC TCGAGCACGC GGCCAGTTGG
GTATCGGCAC GTTTCGAAGT GGAGAAGCGC CGGCGTGCAG AAATGGGCTT CGACGACATG
CTCGTGCGCT TGCAGCACGC ACTCGCCAGC GAGGCCGGCG AGCGCCTGGC CAGTCTGATT
CGTGAGCAGT TCCCGGTAGC GCTGATTGAC GAATTCCAGG ACACCGACCC GGTTCAGTAC
GGCATTTTCG AGCGCATCTA CCAGATCAGT GAAAACCGCG CCGAAACCGG TCTGTTCATG
ATCGGGGACC CCAAACAGGC GATCTACGCC TTCCGCGGTG CCGACATCTA CACCTACCTT
GCGGCGCGGC GCGCCACCAG CGGCCGTCTG CACAGCCTGG ACACCAATTA CCGCTCCAGC
AAAGCCATGG TGGCGGCGGT CAACCAGGTG TTCCTGCAGG CCGAGGCGCG TGAAGCGGGG
CGGGGTGCAT TCCTGTTCCG CGAGGCCGAT GACAACCCGC TGCCATTCAT CGAGGTGCGC
GCCAAGGGGC GTGGCGAACA GCTGCTGATT GACGGTGAAG TCAGTGCAGC CCTGCAATGC
TGGCAGCTGG AAAGTGAAGA GCCAGTCTCC AGCAGTGTTT ACCGCCAGCA ACTGGCCGCC
AGTTGCGCCA GCCATATTGT CGCCTTGCTC AATGGCGGCC AGCAGGGCAC GGCGGGTTTC
CAGAATGCCG AAGGCGAATT GCGCGCCTGC TTGCCCTCGG ACATTGCCAT CCTGGTGCGC
GATGGCCATG AGGCGCAGAT GGTCCGCGCC GAACTGGCCG CACGCGAGGT GCGCAGCGTC
TACCTGTCCG ACAAGGACTC GGTGTTTGCC GCCCAGGAAG CCCACGACCT GCTGGCCTGG
CTGAAGGCCT GCGCCGAGCC TGACTCGGAG CGCCTGCTCA AGGCTGCTCT GGCCAGCCTT
ACACTGGGCC TGTCGCTGGC TGCGCTGGAC CGGCTTAACC AGGACGAGCG GGTCTGGGAG
AGCTGGGTGA TGCGCTTTCG CCTTTACCGC GACACCTGGC AGCGCCAAGG GGTGTTGCCG
ATGTTGCGCC ACCTGCTGCA TGACTTCCAG CTACCGCGTA CGCTGATCCG CCGCAGTGAT
GGCGAGCGGG TGCTGACCAA CCTGCTGCAC CTGGCCGAGC TGCTGCAGCA GGCCGCTGGC
GAGCTGGACG GCGAACAGGC GCTTATCCGC CACCTGGCCG AGCACCTGGC CAGTTCCGGT
CAGGCCGGTG AAGAGCAGAT CCTGCGCCTG GAGAGCGACG AACAGTTGGT CAAGGTGGTG
ACCATCCACA AGTCCAAGGG CCTGGAATAT CCCTTGGTCT ACCTGCCATT CATCTGCACC
AGCAAACCGG TGGATGGTAG CCGTCTACCG CTGGCCTGGC ATGACAGCGA AGGTAACGCC
CACCTCACCC TCACACCTGA CGAGGAGCAG ATCGAGCGCG CTGACGACGA GCGCCTGGCC
GAAGACCTGC GCCTGCTCTA CGTGGCCCTG ACCCGTGCCC AGCATGCATG CTGGCTGGGT
GTCGCCGACC TCAAGCGCGG TAATCAGAAG AGCTCGCAGC TGCATCGCTC GGCGTTTGGC
TACCTGCTGG GGGGCGGCCT GGCCCTGGCT GGCTCGGCGC AGCTGACGGA CTGGTTGCAG
GCTTTGGCGG CAAGTTGCCC GCACATCACT TGTCCGGGCC TGCCGCAGGC GGATGAGCAG
ATGTATCGCA TGCCACACGC CGAACGTGAG CTGCTGCCAG CACGCAGGCC ACGCCATGCG
GCTGCCGAGC ACTGGTGGAT CGCTTCGTAC AGTGCCCTTC GTGTCGGCGA TCAGACCCTC
GGCGCCGACA GCTCGCAGGC CCAGCAACTG CTGGATGACG AGGTGCCCGA TGCCCAGGTG
TTGCGCGAGG TCCCGGCCGA CAGCGGCGAT ATCCATCGCT TCCCACGGGG GCCTAACCCC
GGCACCTTCC TCCATGGTTT GCTGGAGTGG GCAGGCCGTG AGGGCTTCAG CGAGGTCAGC
GGTAACCCTC AACTGATAGA GCGTACCGTT GGCCAGCGCT GCAACCGCCG TGACTGGGCC
GGCTGGATCC CCACCCTGAG CCACTGGATG CAACGTTTGC TGGGCGAGGC GTTGCCGCTG
CCGGGCAGCG ACCAGAGCGT AACGCTGGGC CAACTGCGTC ATTACCAGAT CGAAATGGAA
TTCTGGTTCG CCAGCCACCG GGTCGACGCA GAACAACTCG ATCGCCTGGT GGCACGCCAC
ACCCACCCCG GTCTGGCGCG CCCAGCTGCG CAGCCGACCG TGCTAAACGG CATGTTCAAA
GGGTTCATCG ACCTGGCGTT CGAGCTGGAC GGGCGTTACT ACGTGACCGA CTACAAGTCC
AACTGGCTGG GTGCGGACAT CCAGGCCTAC GATGCCATGG CCATGGAAAA GGCGATTCTT
GAGCACCGCT ACGACCTGCA GTATGTGCTG TACCTGCTGG CCCTGCACCG CCAGTTGCGC
GCGCGGCTGG CGGACTACGA TTATGACCGC CATGTTGGCG GCGCCCTGTT CATCTTCCTG
CGCGGTGCCA GCAGCAGCGG CCACGGCGTG TACCACGCCA AGCCACCGCG TGAGCTGATC
GAAAGCCTCG ATGCACTGTT CCGTGGTGAG CACGCGCCAG TACAGCAGGA CCTGTTTGCC
GGAGTTGCGC CATGA
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| Protein sequence | MTQDRPLALS FPLHGSQLIE ASAGTGKTFT ISALYLRLIL GHGGEQGFER ELLPPQILVV
TFTDAATKEL RERIRARLAE AARFFRGELE GADPLLHQLR DDYPQETWLR CAGRLEIAVQ
WMDEAAVSTI HGWCQRMLRE HAFDSGSLFT QTLETDHSEL LGQVMRDYWR RFCYGMQGDA
LAWVRGNWGS PDALLPRIRP LFGRVRAQQD GPEPAALIQA SLQQRGAQLA RIKAPWAQWA
EELRQICRDA LAAKQVDGRK MQARYFEPWF DKLCAWASDE QLVELDLGTG FTRLTPAGMA
EAWKGEPPEH PALNAMQHLQ QQLQALDSPD APLLEHAASW VSARFEVEKR RRAEMGFDDM
LVRLQHALAS EAGERLASLI REQFPVALID EFQDTDPVQY GIFERIYQIS ENRAETGLFM
IGDPKQAIYA FRGADIYTYL AARRATSGRL HSLDTNYRSS KAMVAAVNQV FLQAEAREAG
RGAFLFREAD DNPLPFIEVR AKGRGEQLLI DGEVSAALQC WQLESEEPVS SSVYRQQLAA
SCASHIVALL NGGQQGTAGF QNAEGELRAC LPSDIAILVR DGHEAQMVRA ELAAREVRSV
YLSDKDSVFA AQEAHDLLAW LKACAEPDSE RLLKAALASL TLGLSLAALD RLNQDERVWE
SWVMRFRLYR DTWQRQGVLP MLRHLLHDFQ LPRTLIRRSD GERVLTNLLH LAELLQQAAG
ELDGEQALIR HLAEHLASSG QAGEEQILRL ESDEQLVKVV TIHKSKGLEY PLVYLPFICT
SKPVDGSRLP LAWHDSEGNA HLTLTPDEEQ IERADDERLA EDLRLLYVAL TRAQHACWLG
VADLKRGNQK SSQLHRSAFG YLLGGGLALA GSAQLTDWLQ ALAASCPHIT CPGLPQADEQ
MYRMPHAERE LLPARRPRHA AAEHWWIASY SALRVGDQTL GADSSQAQQL LDDEVPDAQV
LREVPADSGD IHRFPRGPNP GTFLHGLLEW AGREGFSEVS GNPQLIERTV GQRCNRRDWA
GWIPTLSHWM QRLLGEALPL PGSDQSVTLG QLRHYQIEME FWFASHRVDA EQLDRLVARH
THPGLARPAA QPTVLNGMFK GFIDLAFELD GRYYVTDYKS NWLGADIQAY DAMAMEKAIL
EHRYDLQYVL YLLALHRQLR ARLADYDYDR HVGGALFIFL RGASSSGHGV YHAKPPRELI
ESLDALFRGE HAPVQQDLFA GVAP
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