| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4505 |
|---|
| Symbol | |
|---|
| ID | 5192195 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 5029489 |
|---|
| End bp | 5031006 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640588980 |
|---|
| Product | uracil-xanthine permease |
|---|
| Protein accession | YP_001269809 |
|---|
| Protein GI | 148549707 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG2233] Xanthine/uracil permeases |
|---|
| TIGRFAM ID | [TIGR00801] uracil-xanthine permease
[TIGR03173] xanthine permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.552965 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACGT CCCCTAGCAC GTCTCCCGCC AAGCGACCCG AGGATGAAAA CCTCGGTCTT
GGTGCCAACC TGGCCTATGG TCTGCAGCAT GTGCTGACCA TGTATGGTGG GATCGTCGCA
GTACCCCTGA TCCTGGGGCA GGCCGCGGGC CTGAATGGTG CCGAAATCGG CATGCTGATC
GCCGCATCGC TGTTCGCCGG TGGCCTTGCC ACCCTGCTGC AGACCCTTGG CCTGCCGTTC
TTCGGTTGCC AGTTGCCGCT TGTGCAAGGC GTGTCGTTCG CCGGTGTGGC GACCATGGGT
GCGATCCTGA GCAGCGAGGG GGGCGGTGGC CTGCCAGGAG TGCTCGGCGC GGTCATGGCT
GCGTCGCTGA TCGGCTTTCT GATCACACCG GTGTTTTCGC GCATCACCAA GTTCTTCCCG
CCGCTGGTGA CCGGTATCGT CATCACCACC ATCGGCCTGA CCCTGATGCC GGTTGCTGCA
CGCTGGGTAA TGGGTGGCAA CAGCGCCTCG CCGGAGTTCG GCAGCGTGGC CAACATCGGC
CTGGCCGGGC TGACCTTCGC CATCGTGCTG CTGCTGAGCA AGCTTGGCAG CGCAACCATC
TCACGCCTGT CGATCCTGCT GGCCATGGTG GTCGGCACGC TGATCGCCTG GGCATTGGGC
ATGACCGATT TCAGCAAGGT CAGCGAAGGC CCGATGTTCG CCTTCCCCAC ACCTTTCCAC
TTTGGCATGC CGGAGTTCCA CATCGCCGCG ATCCTGTCGA TGTGTATCGT GATCATGGTC
ACCCTGGTGG AAACGTCGGC CGATATCCTC GCCGTGGGTG AGATCATCGA CACCAAGGTG
GACTCCAAGC GCCTGGGCAA CGGCCTGCGC GCCGACATGG CATCGAGCAT CCTGGCGCCG
ATTTTCGGTT CGTTCACCCA GAGCGCGTTC GCCCAGAACG TTGGCCTGGT GGCCGTGACT
GGGGTCAAGA GCCGCTACGT GGTGGCTACC GGCGGCGTGA TTCTGGTGGT ACTCGGCCTG
CTGCCAGTCA TGGGCCGGGT GATTGCCGCC GTGCCTACCC CGGTACTGGG CGGCGCCGGT
ATCGTGCTGT TCGGCACCGT GGCGGCCAGC GGTATCCGCA CCCTGTCCAA GGTCAGCTAC
AAGAACAACG TCAACCTGAT CATCGTCGCG GCCTCGCTGG GCTTCGGCAT GATCCCGATT
GCCGCGCCGA CCTTCTACCA CCACTTCCCG AACTGGTTCG AGACCATCTT CCACTCCGGC
ATCAGCTCGG CGGCGATCAT GGCCATCCTG CTGAACCTGA TCTTCAACCA CTTCACCACC
GGCAACTCGG AAAACCAGTC AGTGTTCGCT GCAGCCTACG AGCGGACCAT CCAGTATTCG
GACATTTCCG CGCTGCGTGA TGGGGACTAC TTCAAAGATG GCAAGCTGTT CGATGCCGAA
GGTAACGAAG TGCCGATGCT GGAACTGGAC GAGCATGGCA ATGAAACGGT CAGGCGCACG
GCCGTTGCCG AACACTGA
|
|---|
| Protein sequence | MTTSPSTSPA KRPEDENLGL GANLAYGLQH VLTMYGGIVA VPLILGQAAG LNGAEIGMLI
AASLFAGGLA TLLQTLGLPF FGCQLPLVQG VSFAGVATMG AILSSEGGGG LPGVLGAVMA
ASLIGFLITP VFSRITKFFP PLVTGIVITT IGLTLMPVAA RWVMGGNSAS PEFGSVANIG
LAGLTFAIVL LLSKLGSATI SRLSILLAMV VGTLIAWALG MTDFSKVSEG PMFAFPTPFH
FGMPEFHIAA ILSMCIVIMV TLVETSADIL AVGEIIDTKV DSKRLGNGLR ADMASSILAP
IFGSFTQSAF AQNVGLVAVT GVKSRYVVAT GGVILVVLGL LPVMGRVIAA VPTPVLGGAG
IVLFGTVAAS GIRTLSKVSY KNNVNLIIVA ASLGFGMIPI AAPTFYHHFP NWFETIFHSG
ISSAAIMAIL LNLIFNHFTT GNSENQSVFA AAYERTIQYS DISALRDGDY FKDGKLFDAE
GNEVPMLELD EHGNETVRRT AVAEH
|
|---|
| |