Gene Pput_4411 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_4411 
Symbol 
ID5194666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4930143 
End bp4931147 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content60% 
IMG OID640588888 
Producthelix-turn-helix domain-containing protein 
Protein accessionYP_001269717 
Protein GI148549615 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.321471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.2451 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAATGA TGTTTACCCA ACCCTCAGCG TCGCTGCGGC GCGTCAGCAT CCTGGCCATT 
GACAAGGTGT TCGCTTCGAC CTTGATGCAG GCCAAGGACT TCTTCCACCT CGCCAGCCTG
CGCTATAGCA AGCAGCTGGG CCTGGGCTTG CAGCCCATGT TCGACATCCG CCTGGTGAGC
CCCGACAGCC AGCCCGTGGA CAGCTTCAGC AATGTGCAGT TACCGGTTGA CGGCGGCCTG
GACGACGCCG ATGTGATCAT CCTCCCGGCC TACTGGGATG ATTTCGACAA CTTGCTGCAG
CGTTACCCGC AGGTGCTGCC GTGGCTGCGT GAACAGCACG CGCGTGGCGC GGTGCTGTGC
GCCGAGGCCA GTGGTGTGTT CTGGCTGGCC GAATCCGGCC TGCTCGATGG CAAGGAAGCG
ACCACCTACT GGCGCTTCTT CAACAGCTTT GCCGAACGCT TCCCGAAGAT TCGCCTGAAC
CAGGACAAGC ACCTGACCGA TGCCGACAAT ATCTATTGCG CCGGCGGTGC AACCTCGGCC
TGCGACCTTT ACATCTACCT GATCGAACGC TTCTGCGGTG CCAACGTGGC CCGTGCAGTG
TCCCGCGATA TCCTCTACGA AGTGCAACGC AACTACACCC CGGGGCGCAT GGGCTTTGGC
GGGCAGAAAC TGCACCAGGA CCTGATCATC CTGCAGATCC AGCACTGGCT GGAGGAACAC
TTCGCCGACA AGTTCCGCTT CGAGGATGTG GCCCGCAACC ACGGCATGAG CATCCGCAAC
TTCATGCGTC GCTTCCAGGG CGCAACGGGT GACAAGCCGC TGCATTACCT GCAACGGTTA
CGCATCGAGA CAGCCAAGGG GTTGTTGTCG AGTACGCGCA AGAGCATCAA GACCATCAGT
TATGAGGTGG GGTATGACGA TGCCAGTTTC TTTGCGCGGC TGTTCCGCCA ACACACCGAG
TTGTCGCCGA ACCAGTATCG GCAGCAGTTC ATGCAGGAAG CCTGA
 
Protein sequence
MTMMFTQPSA SLRRVSILAI DKVFASTLMQ AKDFFHLASL RYSKQLGLGL QPMFDIRLVS 
PDSQPVDSFS NVQLPVDGGL DDADVIILPA YWDDFDNLLQ RYPQVLPWLR EQHARGAVLC
AEASGVFWLA ESGLLDGKEA TTYWRFFNSF AERFPKIRLN QDKHLTDADN IYCAGGATSA
CDLYIYLIER FCGANVARAV SRDILYEVQR NYTPGRMGFG GQKLHQDLII LQIQHWLEEH
FADKFRFEDV ARNHGMSIRN FMRRFQGATG DKPLHYLQRL RIETAKGLLS STRKSIKTIS
YEVGYDDASF FARLFRQHTE LSPNQYRQQF MQEA