Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4411 |
Symbol | |
ID | 5194666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4930143 |
End bp | 4931147 |
Gene Length | 1005 bp |
Protein Length | 334 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640588888 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001269717 |
Protein GI | 148549615 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.321471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.2451 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAATGA TGTTTACCCA ACCCTCAGCG TCGCTGCGGC GCGTCAGCAT CCTGGCCATT GACAAGGTGT TCGCTTCGAC CTTGATGCAG GCCAAGGACT TCTTCCACCT CGCCAGCCTG CGCTATAGCA AGCAGCTGGG CCTGGGCTTG CAGCCCATGT TCGACATCCG CCTGGTGAGC CCCGACAGCC AGCCCGTGGA CAGCTTCAGC AATGTGCAGT TACCGGTTGA CGGCGGCCTG GACGACGCCG ATGTGATCAT CCTCCCGGCC TACTGGGATG ATTTCGACAA CTTGCTGCAG CGTTACCCGC AGGTGCTGCC GTGGCTGCGT GAACAGCACG CGCGTGGCGC GGTGCTGTGC GCCGAGGCCA GTGGTGTGTT CTGGCTGGCC GAATCCGGCC TGCTCGATGG CAAGGAAGCG ACCACCTACT GGCGCTTCTT CAACAGCTTT GCCGAACGCT TCCCGAAGAT TCGCCTGAAC CAGGACAAGC ACCTGACCGA TGCCGACAAT ATCTATTGCG CCGGCGGTGC AACCTCGGCC TGCGACCTTT ACATCTACCT GATCGAACGC TTCTGCGGTG CCAACGTGGC CCGTGCAGTG TCCCGCGATA TCCTCTACGA AGTGCAACGC AACTACACCC CGGGGCGCAT GGGCTTTGGC GGGCAGAAAC TGCACCAGGA CCTGATCATC CTGCAGATCC AGCACTGGCT GGAGGAACAC TTCGCCGACA AGTTCCGCTT CGAGGATGTG GCCCGCAACC ACGGCATGAG CATCCGCAAC TTCATGCGTC GCTTCCAGGG CGCAACGGGT GACAAGCCGC TGCATTACCT GCAACGGTTA CGCATCGAGA CAGCCAAGGG GTTGTTGTCG AGTACGCGCA AGAGCATCAA GACCATCAGT TATGAGGTGG GGTATGACGA TGCCAGTTTC TTTGCGCGGC TGTTCCGCCA ACACACCGAG TTGTCGCCGA ACCAGTATCG GCAGCAGTTC ATGCAGGAAG CCTGA
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Protein sequence | MTMMFTQPSA SLRRVSILAI DKVFASTLMQ AKDFFHLASL RYSKQLGLGL QPMFDIRLVS PDSQPVDSFS NVQLPVDGGL DDADVIILPA YWDDFDNLLQ RYPQVLPWLR EQHARGAVLC AEASGVFWLA ESGLLDGKEA TTYWRFFNSF AERFPKIRLN QDKHLTDADN IYCAGGATSA CDLYIYLIER FCGANVARAV SRDILYEVQR NYTPGRMGFG GQKLHQDLII LQIQHWLEEH FADKFRFEDV ARNHGMSIRN FMRRFQGATG DKPLHYLQRL RIETAKGLLS STRKSIKTIS YEVGYDDASF FARLFRQHTE LSPNQYRQQF MQEA
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