| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4391 |
|---|
| Symbol | |
|---|
| ID | 5194731 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4912276 |
|---|
| End bp | 4913643 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640588868 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
|---|
| Protein accession | YP_001269698 |
|---|
| Protein GI | 148549596 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
|---|
| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.21178 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0803697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGC CGTTGTCACT CAGCCAGCTG ACCACAGCAC TGAAGGGTCA ACACATCGGT
GGCGACGCCA CGTTCACCGG CGTCAGCATC GATAGCCGCA GTGTCAGCGC CGGGCAACTG
TTCGTCGCCC TGGCCGGCCC GCGTTTCGAT GGCCATGACT ACCTGGCGGA TGTGAAAGCC
AAAGGCGCAG TGGCTGCCCT GGTCGAGCGT GAAGTGGCCG GTGTCGACCT GCCGCAGTTG
CTGGTCAAGG GTTGCCGGGT AGCACTGGGT CAGCTCGGCG CCCTGAACCG CGCGGCTTTC
GACAAGCCTG TAGTGGCCAT TACCGGTTCC AGCGGCAAGA CCACGGTCAA GGAAATGCTC
GCCAGCATCC TGCGTACCCG TGGCCTGGTG CACGCTACCC GCGGCAACTT GAACAATGAC
CTCGGTGCAC CGCTGACACT GCTGGAGATC GCACCGGAGC ACAGCGCAGC AGTGATCGAG
CTGGGTGCCT CGCGCATTGG CGAAATCCGC TACACCGTGG GCCTGACGCA ACCGCAGGTG
GTCATCATCA ACAATGCCGG TACTGCCCAC GTTGGCGAAT TCGGCGGCCC GGACAAGATC
GTCGAAGCCA AGGGCGAGAT TCTCGAAGGC CTGGGCGAAG GCGGTATTGC CATTCTCAAC
CTGGACGACA AAGCCTTTGA TATCTGGAAG GCGCGTGCCG GTGCGCACAA GGTTGTCAGT
TTCGCACGCA GCAACCCGAA GGCCGATTTC CACGCGTCAG ACATTGGTCG CGATGCCCGT
GGCTGCCCGT CCTTCACCCT GCATGGCGCC GGTGAAACGG TAGCCGTGCA ACTCAATGTG
CTGGGTGAAC ACAACGTCAG CAATGCCTTG GCCGCCGCCG CCGCTGCACA TGCCGTTGGT
CTGAGCCTGA GCGGCATCGC CGCCGGCCTG GCTGCGGTGC AACCGGTCAA GGGGCGTACC
GTGGCGCAGA TCGCGCCGAA CGGGGTACGG GTAATCGACG ACAGTTACAA CGCAAATCCC
ACCTCTATGT GCGCAGCCAT TGATATACTC GCCGGCTTTT CCGGACGCAC CGTTCTGGTG
CTTGGGGATA TCGGCGAATT GGGGCAATGG GCGGAAGAAG GCCACCGTCA GGTGGGTGAC
TACGCGCGTG GCAAGGTCGA CGCCCTGTAC GCAGTGGGTT CCAACATGAC ACATGCGGTC
AAGGCGTTCG GCGCCAATGG CCGCCATTTC GCGACTCAAG CTGAGCTGAT CGATGCGGTT
AGCGCCGAGA ATGCCAGTGA CACCACTATC TTGATCAAGG GCTCGCGCAG CGCTGCGATG
GAAAACGTCG TAGCGGCATT GTGCGGTGCC AGCGGGGAGA AACATTAA
|
|---|
| Protein sequence | MLKPLSLSQL TTALKGQHIG GDATFTGVSI DSRSVSAGQL FVALAGPRFD GHDYLADVKA
KGAVAALVER EVAGVDLPQL LVKGCRVALG QLGALNRAAF DKPVVAITGS SGKTTVKEML
ASILRTRGLV HATRGNLNND LGAPLTLLEI APEHSAAVIE LGASRIGEIR YTVGLTQPQV
VIINNAGTAH VGEFGGPDKI VEAKGEILEG LGEGGIAILN LDDKAFDIWK ARAGAHKVVS
FARSNPKADF HASDIGRDAR GCPSFTLHGA GETVAVQLNV LGEHNVSNAL AAAAAAHAVG
LSLSGIAAGL AAVQPVKGRT VAQIAPNGVR VIDDSYNANP TSMCAAIDIL AGFSGRTVLV
LGDIGELGQW AEEGHRQVGD YARGKVDALY AVGSNMTHAV KAFGANGRHF ATQAELIDAV
SAENASDTTI LIKGSRSAAM ENVVAALCGA SGEKH
|
|---|
| |