| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4385 |
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| Symbol | ddl |
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| ID | 5195010 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4905167 |
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| End bp | 4906123 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640588862 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_001269692 |
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| Protein GI | 148549590 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.0215233 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.165436 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCG CCTACGACAA GCTGCAGTCG ACCCTGGACG TCAAGGCGTT CGGCCGCGTC
GCCGTGCTGT ACGGTGGCAA GAGCGCCGAG CGTGAGGTGT CGCTGAAATC TGGCGCCGCA
GTGATCGATG CGCTGAGCAC TGCCGGCGTC GACGTGGTTG GCATCGACGT CGGTGACGAC
CTGCTCGCAC GCCTGCAGAG CGAGAAGATT GACCGCGCCT TCATCATCCT CCACGGCCGT
GGCGGTGAAG ACGGGAGCAT GCAAGGTTTG CTGGAGTGCC TGGGCATCCC CTACACCGGC
AGCGGCATCC TGGCTTCGGC GCTGGCGATG GACAAGCTGC GCACCAAGCA GGTGTGGCAG
AGCCTGGGCA TTCCCACGCC ACGCCACGCG GTGCTGGCGA GCGAAAGCGA TTGTTTGCAG
GCCAGTACGG AACTGGGCTT CCCGCTTATC GTCAAACCCG CCCATGAAGG CTCTAGCATC
GGCATGGCCA AGGTGAACAG CGCCCAGGAA CTGGTCGCCG CCTGGCAGGA CGCCGCCAAA
TACGATTCCC AGGTACTGGT GGAGCAGTGG ATCCACGGTC CGGAGTTCAC CATCGCGGTA
CTGCGCGGCC AGGTGCTGCC GCCGATCGCC CTGGGTACGC CGCACGTGTT CTACGACTAC
GACGCCAAGT ACATCGCCAA CGATACCCAG TACCGCATCC CGTGCGGGCT GGATAGCGTC
AAGGAACAGG AACTGATCGA CCTGACTGCG CGCGCCTGCG ATGCCATTGG CATCGAAGGC
TGGGGGCGGT TGGACGTGAT GCAGGACGAG CAGGGCCAGT TCTGGCTGCT CGAAGTCAAC
ACCGCACCAG GCATGACAGA TCATAGCCTG GTGCCCATGG CGGCCCGCGC GGCTGGCCTG
GACTTCCAGC AACTGGTGCT GGCAATCCTG GCCGAAAGCG TGGCGACGCG AGGTTAA
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| Protein sequence | MTSAYDKLQS TLDVKAFGRV AVLYGGKSAE REVSLKSGAA VIDALSTAGV DVVGIDVGDD
LLARLQSEKI DRAFIILHGR GGEDGSMQGL LECLGIPYTG SGILASALAM DKLRTKQVWQ
SLGIPTPRHA VLASESDCLQ ASTELGFPLI VKPAHEGSSI GMAKVNSAQE LVAAWQDAAK
YDSQVLVEQW IHGPEFTIAV LRGQVLPPIA LGTPHVFYDY DAKYIANDTQ YRIPCGLDSV
KEQELIDLTA RACDAIGIEG WGRLDVMQDE QGQFWLLEVN TAPGMTDHSL VPMAARAAGL
DFQQLVLAIL AESVATRG
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