| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4311 |
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| Symbol | |
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| ID | 5191029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4821347 |
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| End bp | 4822828 |
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| Gene Length | 1482 bp |
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| Protein Length | 493 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588788 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001269619 |
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| Protein GI | 148549517 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.245548 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTAC GTTCCGCTCT GTTCTCGCAA CGCTCGCTGA TCGTTACCCT GCTCGTGTTA
CTGGCCTGCG GCTTCCTGGC CACCTCGCTG CTCAGCTACT TCTCCTCTCG CAGCGCCATC
CGCGACGGCA TCATCAATAC CGAATTGCCG CTGACCTCCG ACACTGTCTA CTCGGAAATT
CAGAAAGACC TGATCCGCCC GGTGCTGATC GCCTCGATGA TGGCCCAGGA CACCTTCCTG
CGCGACTGGG TGCTGTCCGG CGAGCAGGAT ACCGAACGCA TGACCCGCTA CCTGAGCGAG
GTCATGGGCA AGCAGGACAT CTTCACGTCC TTTTTCGTGT CCGATCGCAC GCGGACCTAC
TACCAGGCCA AAGGCGTGCT CAAGCACGTC GAACCAGGCA CCTGGCGTGA TGCCTGGTAT
TTCCGTCTGC GTGAGCTCAA GGCCCCTTAT GAGATCAATG TCGATCTGGA CATGGCCAAC
CAGGACAGCC TGACCGTGTT CATCAACTAC CAGGTGCACG ACTACCAGCA GCGCTTCATC
GGCGCGGCAG GCGTAGGGCT GAGCGTATCG TCGGTGGTCA AGCTGATCGA TCAGTACCAA
CGCCGCTACC AACGCGCGGT GCTATTCACC GATGCCAAAG GCAAGGTGCT GTTGACCGGC
TCCGAGGGTG GCCCGCATGG TTTGCAAGTC GGCCAGTCAC TCAGCGACAA CTCTGAGCTG
AAGGCCATGC TGGCCGAGCA GAGGGTGCCG GGCGAAGGCA GCCACGAGTA CCATGACAGC
GAAAACCACA GCCACTTTCT CAACGTTCGC CACCTGCCCG AACTGGACTG GTACCTGTTG
GTGGACAAAC GCGAAACCGG CGTCCTCGAC CGCATTCGCC ACGCGCTGTA CCTGAACCTG
GCGATCTGTA CGATGATCAC CCTGGTGGTG CTGGCACTGG TGCATGCCAT GGTCCGCCGC
CACCAGGCCA GCACCGAAGC CTTGGCCACG CTCGACAGCC TCACCGGCTT GCACAACCGG
CGCAGCTTCG ACCTGCTCGC CGCCCAGGCG CTGCGAGAAG CCCGGCGCGA CAGTAGCCCT
CTGGTGGCCT TGCTGATTGA TCTGGACCAC TTCAAGGCGT TGAACGACAA CCACGGCCAC
CTGGCAGGTG ACGAAGTGCT ACGCCAATTC GCCAATGTGC TGCAAGGCAG CCTGCGTCAG
TCAGATATAC TGTGCCGCTG GGGCGGTGAG GAATTCATCG TGCTGCTGCG CGAAGCTGAA
GGCGGCCAGG CCGTCGAGGT GGCGGAAAAG ATCCGGCGAC GCACCGAACA GCTGACCTTC
AGTTACGACA ACCAGCCGCT GCGACTGACC ACCAGCATCG GCCTGAGCAG CCTGCAACCG
GGGGATACCC TGCACGCCCT GCTGACCCGC GCCGACCGCG CGCTTTATCG TGCCAAGCAG
GCTGGCCGCA ACCGCGTCTG CAGTGAAACC CGCCATGAAT GA
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| Protein sequence | MPLRSALFSQ RSLIVTLLVL LACGFLATSL LSYFSSRSAI RDGIINTELP LTSDTVYSEI
QKDLIRPVLI ASMMAQDTFL RDWVLSGEQD TERMTRYLSE VMGKQDIFTS FFVSDRTRTY
YQAKGVLKHV EPGTWRDAWY FRLRELKAPY EINVDLDMAN QDSLTVFINY QVHDYQQRFI
GAAGVGLSVS SVVKLIDQYQ RRYQRAVLFT DAKGKVLLTG SEGGPHGLQV GQSLSDNSEL
KAMLAEQRVP GEGSHEYHDS ENHSHFLNVR HLPELDWYLL VDKRETGVLD RIRHALYLNL
AICTMITLVV LALVHAMVRR HQASTEALAT LDSLTGLHNR RSFDLLAAQA LREARRDSSP
LVALLIDLDH FKALNDNHGH LAGDEVLRQF ANVLQGSLRQ SDILCRWGGE EFIVLLREAE
GGQAVEVAEK IRRRTEQLTF SYDNQPLRLT TSIGLSSLQP GDTLHALLTR ADRALYRAKQ
AGRNRVCSET RHE
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