| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4189 |
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| Symbol | |
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| ID | 5191874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4689435 |
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| End bp | 4690631 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588666 |
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| Product | succinyldiaminopimelate transaminase |
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| Protein accession | YP_001269497 |
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| Protein GI | 148549395 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | [TIGR03538] succinyldiaminopimelate transaminase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.199864 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCATG CCTTGACCCA GCTTCAGCCC TATCCGTTCG AAAAGCTCCG CGCCCTGCTG
GGCAGTGTGA AGCCTGCGGC GGACAAACGC GCCATCGCCC TGTCGATCGG TGAGCCGAAG
CACGAATCGC CGGCGTTCGT TGCCCAGGCC ATGGCCGACA ACCTCGACAA GCTGGCGGTT
TACCCGAGCA CCCTTGGTTT GCCAGCCCTG CGCCAGGCCA TCGGCCAGTG GTGTGAACGA
CGCTTTGGCG TGCCAGCCGG CTGGCTGGAC GCCGACCGCC ACATCCTGCC GGTCAATGGC
ACCCGGGAAG CGCTGTTCGC CTTCACCCAG GCCGTGGTCA ACCGCGCCGA TGACGGCCTG
GTGATCAGCC CCAACCCGTT CTACCAGATC TACGAAGGCG CAGCGCTGCT GGCCGGCGCC
ACCCCGCACT ACCTGCCGTG CCTGGAAAAC AACGGTTTCA ACCCGGACTT CGACGCCGTA
CCGGCCGAGG TGTGGAAGCG TTGCCAGATC CTGTTCCTGT GCTCGCCGGG CAACCCTACC
GGTGCGCTGG TGCCAATGAA CACCCTGAAG AAGCTGATTG CCCTGGCTGA CGAACACGAC
TTCGTGATCG CCGCCGACGA GTGCTACAGC GAGCTGTACT TCGACGAGGA CGCGCCACCG
CCTGGCCTGC TGTCGGCATG CGCCGAGCTT GGCCGTAGCG ATTTTGCGCG CTGCGTGGTG
TTCCACAGCC TGTCCAAGCG CTCCAACCTG CCTGGGCTGC GCTCGGGCTT CGTCGCGGGC
GATGCCCAGA TCATCAAGCC GTTTCTGCTG TACCGCACCT ACCACGGCTG CGCGATGCCG
GTGCAAACCC AGCTGGCCAG CATCGCTGCC TGGCAGGACG AGGCGCATGT GCGCGCGAAC
CGCGACCAAT ACCGAGCCAA GTACGATGCC GTGCTGGATA TTCTGCAGCC GGTACTGGAC
GTGCAACGCC CGGACGGCAG TTTCTACCTG TGGGCCAAGG TACCGGGCGA CGATGCCGAG
TTCACCCGTG ACCTGTTCGA AGCCCAGCAT GTGACCGTGG TACCGGGGTC GTACCTGTCA
CGCGAGGTGG ATGGGGTGAA CCCGGGTGCC GGGCGCGTGC GCATGGCACT GGTTGCACCG
CTGGCCGAAT GCATCGAGGC GGCCGAGCGG ATTCGCGCCT TCCTGCAAAA CAGCTGA
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| Protein sequence | MNHALTQLQP YPFEKLRALL GSVKPAADKR AIALSIGEPK HESPAFVAQA MADNLDKLAV
YPSTLGLPAL RQAIGQWCER RFGVPAGWLD ADRHILPVNG TREALFAFTQ AVVNRADDGL
VISPNPFYQI YEGAALLAGA TPHYLPCLEN NGFNPDFDAV PAEVWKRCQI LFLCSPGNPT
GALVPMNTLK KLIALADEHD FVIAADECYS ELYFDEDAPP PGLLSACAEL GRSDFARCVV
FHSLSKRSNL PGLRSGFVAG DAQIIKPFLL YRTYHGCAMP VQTQLASIAA WQDEAHVRAN
RDQYRAKYDA VLDILQPVLD VQRPDGSFYL WAKVPGDDAE FTRDLFEAQH VTVVPGSYLS
REVDGVNPGA GRVRMALVAP LAECIEAAER IRAFLQNS
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