| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4163 |
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| Symbol | ispD |
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| ID | 5191737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4659389 |
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| End bp | 4660096 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640588640 |
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| Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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| Protein accession | YP_001269471 |
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| Protein GI | 148549369 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
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| TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.713784 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGATA CCTTGCCGGC CTTCTGGGCC GTGATTCCTG CGGCGGGTGT GGGTGCCCGC
ATGGCTGCCG ACCGCCCCAA GCAATACCTG GAGCTGGCTG GGCAGACCCT TCTCGAGCAC
AGCCTCGACT GTTTTCTTGG CCACCCGGCA CTTAAGGGCG TGGTTGTCAG CATTGCCGAA
GACGACCCGT ACTGGCCTGG CCTGCGCTAC GCCAGCGACC CACGCATCCA GTGCGCGGCG
GGCGGGCGTG AACGCGCTGA CTCGGTGCTT AACGCCTTGC TGGTGCTGCA TGCCCAGGGG
GCGGGGGACA GCGACTGGGT GCTGGTGCAC GATGCTGCGC GGCCGAACCT GGCACGCAGC
GACCTGGACA AGCTGTTGTC GGAGCTGGCG GACGACCCGG TGGGTGGCCT GCTGGCGGTG
CCGGCGCGCG ATACCCTCAA GCGTGCCGAC AGCCATGGCC GGGTGAGTGC TACGGTGGAC
CGCAGCACGA TCTGGCAGGC GTACACACCG CAGATGTTCC GCCTTGGAGC GTTGCACCGG
GCGCTGGCTG AGTGCCTGGT GTCGGATGTG GTGGTGACCG ATGAAGCCTC GGCCATCGAA
TGGTCCGGTC AGGCGCCGCG GCTGGTGGAA GGGCGCAGTG ACAACATAAA GGTAACCCGG
CCTGAAGATC TCGAATGGTT GCGCCAGCGC TGGGCGGGTA AACGCTGA
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| Protein sequence | MIDTLPAFWA VIPAAGVGAR MAADRPKQYL ELAGQTLLEH SLDCFLGHPA LKGVVVSIAE
DDPYWPGLRY ASDPRIQCAA GGRERADSVL NALLVLHAQG AGDSDWVLVH DAARPNLARS
DLDKLLSELA DDPVGGLLAV PARDTLKRAD SHGRVSATVD RSTIWQAYTP QMFRLGALHR
ALAECLVSDV VVTDEASAIE WSGQAPRLVE GRSDNIKVTR PEDLEWLRQR WAGKR
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