Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4080 |
Symbol | |
ID | 5192537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4595682 |
End bp | 4596608 |
Gene Length | 927 bp |
Protein Length | 308 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640588557 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001269388 |
Protein GI | 148549286 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGATTCA CACTCCGTCA AATGCAAGTC TTCGTCGCCG TCGCCCAGCA CCAAAGCGTC TCTCGGGCCG CCAGCCTGTT GGCGCTGTCG CAGTCGGCCG CCAGTACCTC TATCACGGAA CTGGAGCGGC AATCGAGCTG CCAGCTGTTC GACCGTGCCG GCAAACGCCT GGCCCTCAAT GCCCTGGGCC ATCAATTGCT GCCACAAGCA GTAGCCCTGC TTGATCAGGC CAAGGAAATC GAAGACCTGC TCAACGGCAA ATCCGGTTTC GGCTCACTGG CGGTCGGCGC CACCCTCACC ATCGGCAACT ACCTGGCCAC CCTGCTGATC GGCAACTACA TGCAGACACA CCCGGAAAGC CAGGTAAAAC TGCATGTTCA AAATACTGCG CATATCGTGC AACAGGTCGC GCACTACGAA ATTGATCTGG GTCTAATCGA AGGTGACTGC AATCACCCCG ACCTGGAAGT TCAGCCGTGG GTCGAGGACG AACTGGTGGT GTTCTGTGCG CCACAGCACC CACTGGCGAA ACTGGGCCGC GCCGATATCG AAAGCCTTTC GCAGGAGGCG TGGATCCTGC GCGAACAAGG CTCAGGCACG CGCCTGACCT TCGACCAGGC CATGCGCCAT CACCGCGCCA ACCTTAATAT TCGCCTGGAG CTGGAGCACA CCGAAGCGAT CAAGCGCGCG GTGGAGTCGG GCCTGGGCAT CGGTTGCATT TCACGTCTGG CCCTGCGCGA CGCCTTCCGC CGTGGCAGCC TGGTACCTGT GGAAACACCA GAGCTGGACC TGCTGCGCCA GTTCTACTTC ATCTGGCACA AACAGAAGTA CCAGACCTCG GCCATGCGTG AGTTTCTCGA GCTATGCCGC AGCTTCACTG CGGGCTTTAC CCGCAGTGAC GAGATCGTGC TGCCGCCGAT CGCTTAA
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Protein sequence | MRFTLRQMQV FVAVAQHQSV SRAASLLALS QSAASTSITE LERQSSCQLF DRAGKRLALN ALGHQLLPQA VALLDQAKEI EDLLNGKSGF GSLAVGATLT IGNYLATLLI GNYMQTHPES QVKLHVQNTA HIVQQVAHYE IDLGLIEGDC NHPDLEVQPW VEDELVVFCA PQHPLAKLGR ADIESLSQEA WILREQGSGT RLTFDQAMRH HRANLNIRLE LEHTEAIKRA VESGLGIGCI SRLALRDAFR RGSLVPVETP ELDLLRQFYF IWHKQKYQTS AMREFLELCR SFTAGFTRSD EIVLPPIA
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