| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4062 |
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| Symbol | |
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| ID | 5193549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4577745 |
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| End bp | 4579985 |
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| Gene Length | 2241 bp |
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| Protein Length | 746 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640588539 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001269370 |
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| Protein GI | 148549268 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.733474 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.507158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTACAGG TGAGAGTGCA CCAGCCGGTC AACACCGACG GCAGTATCAA TCTCGAAGCA
TGGTTGGACC ATGTGGTAAG CGTCGATTCG GCACTGGATC GCGCAGCGCT GAAAGAAGCC
TGCGAGTTTG CTCTTGAGGT AGAGAAAAAG GGCAACCCGG CCAAGCATTC CTGGGCGGAT
GGTACGTCCA GCTTCCAGGC AGGCCTGGAA ATCGCCGAAA TTCTTGCTGA CCTCAAGCTC
GACCAGGACT CTCTGGTGGC TGCGGTCATC TACCGCTCGG TGCGCGAGGG CAAGGTCACC
CTCGCCGAGG TCAGCCAGCG TTTTGGCCCG GTGGTGTCCA AGCTGATCGA CGGCGTGCTG
CGCATGGCCG CCATCAGTGC CAGCCTCAGC CCACGACAGT CGCTGGTGCT GGGCTCGCAG
GCGCAGGTCG AGAACCTGCG CAAGATGCTG GTGGCCATGG TTGACGACGT GCGCGTGGCG
CTGATCAAGC TGGCCGAACG CACGTGCGCA ATCCGGGCGG TCAAGTCCGC CGATGACGAG
AAACGCCTGC GTGTCGCGCG TGAAGTGTTC GACATCTATG CGCCGCTCGC GCACCGCCTG
GGTATCGGTC ACATCAAGTG GGAGCTGGAA GACCTGTCCT TCCGCTACCT GGAGCCCGAC
CAGTACAAGC AGATCGCCAA GCTGTTGCAT GAGCGGCGAC TGGACCGCGA GCGCTTCATC
AGCGACGTGA TGAACCAGTT GCAGAACGAG TTGCTCGCCA CTGGCGTAAA TGCCGACATC
AGCGGTCGGG CGAAACATAT CTATTCGATC TGGCGCAAGA TGCAGCGCAA AGGCCTGGAG
TTCAGCCAGA TCTACGACGT GCGTGCGGTG CGCGTGCTGG TGCCGGAAAT CCGCGACTGC
TACACCGCGC TGGGCATCGT GCACACCTTG TGGCGGCATA TTCCCAAGGA GTTCGACGAC
TACATCGCCA ACCCCAAGGA GAACGGCTAC CGCTCGTTGC ACACTGCGGT AATCGGCCCC
GAGGGCAAGG TGCTGGAGGT GCAGATCCGC ACCCACGGCA TGCATGAAGA GGCCGAACTT
GGGGTATGCG CCCACTGGCG CTACAAGGGC ACCGACGTCA AGCCCAGCTC CAACCACTAC
GAAGAAAAGA TTTCCTGGTT GCGCCAGGTG CTGGAATGGC ACGAAGAGCT GGGCGACATC
GGTGGCCTGG CCGAGCAGTT GCGGGTCGAC ATCGAGCCTG ACCGGGTTTA TGTGTTCACC
CCCGACGGCC ACGCCATCGA CCTGCCCAAA GGCGCCACGC CATTGGACTT TGCCTACCGC
GTGCACACCG AGATCGGCCA CAACTGCCGC GGCGCGAAGA TCAACGGCCG TATCGTGCCG
CTGAACTACA GCCTGCAGAC TGGCGAGCAG GTGGAGATCA TCACCAGCAA GCACGGCAAC
CCTAGCCGTG ACTGGTTGAA CTCCAACCTG GGCTACGTGA CCACCTCACG GGCGCGGGCC
AAGATCGTCC ACTGGTTCAA ATTGCAGGCC CGCGACCAGA ACGTTGCTGC CGGCAAGACC
TTGCTTGAGC GCGAGCTCAG TCGTCTGGGC CTGCCGCAGG TTGATTTCGA GCGCCTGGCC
GAGAAGACCA ACGTCAAGAC CGCCGAGGAC ATGTTTGCCT CGCTCGGTGC TGGCGACCTG
CGCCTGGCTC ATCTGGTCAA CGCTGCCCAG CAGTTGCTGG AGCCTGAGCG TATCGAACAG
ATCGAGCTGG TGCCGCGCAA GCCTACCGGG CCGCGTACCG GCAAGCGTGG CGACATTCAG
ATCCAGGGTG TCGGCAACCT GCTGACACAG ATGGCCGGCT GCTGCCAGCC GCTACCGGGC
GATGCCATTG TCGGTTACAT CACCCAGGGC CGTGGCGTGA GCATTCATCG CCAGGACTGC
GCCTCGGTAC TGCAGCTGGC GGGCAAGGAG CCAGAGCGCA TGATCCAGGT GAGCTGGGGG
CCGATCCCGG TGCAGACCTA CCCGGTCGAC ATCGTCATCC GTGCCTACGA CCGCCCGGGC
CTGCTGCGCG ATGTGTCTCA GGTGCTGCTG AACGAGAAGA TCAACGTGCT GGCGGTGAAT
ACCCGTTCGA ACAAGGAAGA CAACACCGCG CTGATGTCGC TGACCATCGA GATTCCAGGC
CTGGACGCGC TGGGGCGCCT GCTGGGGCGG ATCTCGCAGT TGCCGAACAT CATCGAGACG
CGGCGTAATC GTACCCCTTG A
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| Protein sequence | MVQVRVHQPV NTDGSINLEA WLDHVVSVDS ALDRAALKEA CEFALEVEKK GNPAKHSWAD
GTSSFQAGLE IAEILADLKL DQDSLVAAVI YRSVREGKVT LAEVSQRFGP VVSKLIDGVL
RMAAISASLS PRQSLVLGSQ AQVENLRKML VAMVDDVRVA LIKLAERTCA IRAVKSADDE
KRLRVAREVF DIYAPLAHRL GIGHIKWELE DLSFRYLEPD QYKQIAKLLH ERRLDRERFI
SDVMNQLQNE LLATGVNADI SGRAKHIYSI WRKMQRKGLE FSQIYDVRAV RVLVPEIRDC
YTALGIVHTL WRHIPKEFDD YIANPKENGY RSLHTAVIGP EGKVLEVQIR THGMHEEAEL
GVCAHWRYKG TDVKPSSNHY EEKISWLRQV LEWHEELGDI GGLAEQLRVD IEPDRVYVFT
PDGHAIDLPK GATPLDFAYR VHTEIGHNCR GAKINGRIVP LNYSLQTGEQ VEIITSKHGN
PSRDWLNSNL GYVTTSRARA KIVHWFKLQA RDQNVAAGKT LLERELSRLG LPQVDFERLA
EKTNVKTAED MFASLGAGDL RLAHLVNAAQ QLLEPERIEQ IELVPRKPTG PRTGKRGDIQ
IQGVGNLLTQ MAGCCQPLPG DAIVGYITQG RGVSIHRQDC ASVLQLAGKE PERMIQVSWG
PIPVQTYPVD IVIRAYDRPG LLRDVSQVLL NEKINVLAVN TRSNKEDNTA LMSLTIEIPG
LDALGRLLGR ISQLPNIIET RRNRTP
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