Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4030 |
Symbol | |
ID | 5193255 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4548239 |
End bp | 4549519 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640588507 |
Product | aromatic hydrocarbon degradation membrane protein |
Protein accession | YP_001269338 |
Protein GI | 148549236 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2067] Long-chain fatty acid transport protein |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0150189 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAG TAATGCTCAA AACCTCCCTC GGCGTAGCCG TTGCGCTTGC TTCCAGCCAA CTGCTCGCCG CCGGGTTCGC GCTGAACGAA CAAAGTATCA GCGGTATGGG AACCGGTTTT GCGGGGCGCT CGTCCTCTGC CGACGATGCC AGCACTGTGT ATGGCAACCC AGCCGGCATG TCCCGCCTCA AGCGCGAACA ATTCACCGTG GGCGGCGCTG CCGTCATCGC CAAGACCGAC ATATCGGGCC CAGGCAGCAA CTTCGGGGGG GAAACCGATG GTGACATGGT GCCTCTCGTT GGCGTACCCA TGGGCTATTA CGTCAAGCCG ATTGATGATC ACTGGAGCGT TGGCTTCGGC GTTTACGTGC CATACGGCCT GATCACCGAC TACGGTAGCG ATGACGCTGC ACGCTACTGG GGCAAGAAGA GCAAGGTCGA GGTTGTCACC TTCCAGCCAA CCGTCAGCTA CGCCTTCAAC GACAAAGTGT CGATCGGTTT TGGCCCGACC ATCAACCGTA TCAAGGGTGA ACTGGGTTCG AACCTGAGCA GCAAGGCCCT CCTGGGGCCC AATGGCCCTG ATGGCGAGAC CAAGATCAAG GGCGACGACA CTGCAATCGG TTACAACATC GGCGTTCTGG TGCAAGCTAC GGACCGTACC CGTCTGGGCC TGACCTATCA CTCGATGGTC GACTACAAGC TTGAAGGCAA TACCCGCGTT TCCTACCCGA TTCCACAGCT TGGCCTGAAC GGCAAGTTCG ACGCCAGCCT GAAAATCAAG ACACCAGAGT CAGTGGACTT CTCGGTCACT CATGAACTGG ATGACCATTG GACACTGTAT GCGGGTAGCA CCTGGACGCG CTGGAGCCGC CTGGAAAGCA TCGTCGTCGA GAACGAAGCG CCGGCAGGCT ACCCGTTGAA GACCATCACC GAAGAGCAGA ACTGGCACGA CACCTGGGCC CACGCCATTG GTGCGTCCTA CAAGGTGAAC AAGGAGTGGA CCCTGCGCGC AGGCTTCTCC GTCGACCAGT CGCCCACCAA CAACCATGAT CGCTCGCCAC GCATTCCGAC TGGCGATCGT AAAGCGGTCA GCTTTGGTGC CGGCTGGAGC CCGAACGATG ACATGACCAT CGACGTTGCC TATTCGTATC TGTGGGAAGA GGATACCAAG GTCAACAACC TGCCAAGCTC GCAACAACAA GGGCTGTTGA AAGGCAGCTA CCAAGCCAAG TACGAGAACA GCGCTCACGG TATCGGTGCA TCCCTCACCT ACCGCTTCTG A
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Protein sequence | MKKVMLKTSL GVAVALASSQ LLAAGFALNE QSISGMGTGF AGRSSSADDA STVYGNPAGM SRLKREQFTV GGAAVIAKTD ISGPGSNFGG ETDGDMVPLV GVPMGYYVKP IDDHWSVGFG VYVPYGLITD YGSDDAARYW GKKSKVEVVT FQPTVSYAFN DKVSIGFGPT INRIKGELGS NLSSKALLGP NGPDGETKIK GDDTAIGYNI GVLVQATDRT RLGLTYHSMV DYKLEGNTRV SYPIPQLGLN GKFDASLKIK TPESVDFSVT HELDDHWTLY AGSTWTRWSR LESIVVENEA PAGYPLKTIT EEQNWHDTWA HAIGASYKVN KEWTLRAGFS VDQSPTNNHD RSPRIPTGDR KAVSFGAGWS PNDDMTIDVA YSYLWEEDTK VNNLPSSQQQ GLLKGSYQAK YENSAHGIGA SLTYRF
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