| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4025 |
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| Symbol | |
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| ID | 5191338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4540396 |
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| End bp | 4543875 |
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| Gene Length | 3480 bp |
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| Protein Length | 1159 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588502 |
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| Product | integral membrane sensor hybrid histidine kinase |
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| Protein accession | YP_001269333 |
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| Protein GI | 148549231 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0792472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGTTGT CCAGCGGGCT GATCGCCGTG GTCGCCCTGG CCTATATGGC CATCATGTTC
GCCATCGCCT TCTATGGCGA CCGCCGCAGC ACGCCATTGC CGCCAAAGCT GCGTGCCTGG
GTGTACAGCC TGTCGCTGGC CGTGTACTGC ACCAGCTGGA CCTTCTTCGG CGCGGTCGGC
CAGGCCGCCG AACAGCTTTG GGCATTCCTG CCCATCTACC TGGGCCCGGT ACTGCTGCTG
ATCTTCGCGC CGTGGGTGCT GCAGAAGATG GTGTTGATCA GCAAGCAGCA GAACATCACC
TCGATCGCCG ACTTCATTGC CGCACGCTAC GGCAAGTCGC AGACCCTGGC AGTGGTGGTG
GCGCTGATCT GCCTGGTCGG CGTGCTGCCG TATATCGCCT TGCAGCTCAA GGGCATCGTA
CTGGGCGTGA ACCTGTTGAT CGGCGCCAAC GCCGACGCCA CCGGCACACG CGTGCAGGAC
ACCGCGCTGG TGATATCGCT GGTACTGGCG CTGTTCGCCA TCGTCTTCGG TACCCGCAGC
CTGGATGTGA CCGAACACCA CCGCGGCATG GTCCTGGCGA TCGCCTTCGA ATCGCTGATC
AAGCTGCTGG CGTTTCTTGC CGTGGGCATC TTCATCGTTT TCAACCTGTA TGACGGCTTC
GACGACCTGT TCAGCCAGGC CCGCCAGTCG ATCCACTTGC AGGACTATTG GAAAGAAACC
ATCAATTGGC CGTCCATGGT GGTGCAAACC GCCGTGGCGA TGATGGCAAT CATCTGCCTG
CCCCGGCAGT TCCACGTTAC CGTGGTCGAG AACATCGAAC CGCAGGACTT GCGCCTGGCG
CGCTGGGTAT TCCCCATGTA CCTGGCACTG GCCGCGCTGT TCGTGGTGCC GATTGCCCTG
GCCGGGCAGA TGATGCTGCC CGGCACGGTG ATCTCCGACT CGTTTGTCAT CAGCCTGCCG
CTGGCCGAGG CGCACCCGAG CCTTGCCCTG CTGGCGTTCA TCGGCGGCGC CTCGGCGGCT
ACCGGCATGG TGATCGTCGA GGCCGTGGCG CTGTCGACCA TGGTGTCCAA CGACATGCTG
CTGCCCTGGC TACTGCGCCG CAACAACGCC GAGCGGCCTT TCGAAGCATT TCGCCACTGG
ATGCTTTCGG TTCGCCGGGT AACCATCGTG GTGATCCTGC TGCTGGCCTA TGTCAGCTAC
CGCCTGCTGG GTTCCACCGC CAGCCTGGCG ACCATCGGCC AGATCGCCTT TGCCGCTGTG
ACCCAGCTCA CCCCGGCCAT GCTTGGCGCG CTGTACTGGA AGCAGGCCAA CCGTCGCGGC
GTGTTCGCCG GCCTGGCCGC TGGCATTTTC CTGTGGTTCT ACACCTTGGT GCTGCCGATT
GCCGCGCACA GCCTGGGCTG GTCGTTGCAG TTGTTCCCTG GCCTGGCGTG GCTGCACGGC
AACCCGCTGA ACCTGCCGAT CAGTCCACTG ACCCAAGGTG TGGTGCTTTC ACTGGCGGGC
AACTTCACCC TGTTCGCCTG GGTTTCGGTG CTGTCGCGCA CACGGGTTTC CGAGCACTGG
CAGGCCGGCC GGTTCATTGG CCAGCAGACC AGCGCGCGGC CCAGCAGCAA GCCGCTGCTG
GCGGTGCAGA TCGACGACCT GTTGACCCTG GCCTCGCGCT TTGTCGGGGA AGAGCGCGCA
CGGCAGAGCT TCATCCGCTT TGCCTACCGC CAGGGCAAGG GCTTCAACCC GAACCAGAAC
GCCGATGGCG ACTGGATCGA GCACACCGAA CGCCTGCTGG CCGGGGTACT CGGTACCTCC
TCGACCCGCG CCGTGGTCAA AGCGGCCATC GAAGGCCGCG ACATGCAGCT GGAAGACGTG
GTGCGCATCG CTGACGAAGC CAGTGAGGTG CTGCAGTTCA ACCGCGCCCT GCTGCAAGGC
GCCATCGAGA ACATCAACCA GGGCATCAGC GTGGTCGACC AGAACTTGCA CTTGGTGGCC
TGGAACCGCC GCTACCTGGA GCTGTTCAAC TACCCGGACG GGCTGATCAG CGTAGGGCGA
CCGATTGCCG ACATCATCCG CTACAACGCC GAGCGCGGCC TGTGCGGCCC CGGCGAGGCG
CAAGTGCATG TGGCGCGGCG GCTGCACTGG ATGCGTCAGG GCCGCGCGCA CTCCTCCGAG
CGGCTGTTCC CCAATGGCCG GGTGATCGAG CTGATCGGCA ACCCGATGCC GGGCGGCGGC
TTTGTCATGA GCTTCACCGA CATCACCCCG TTCCGCGAGG CCGAGCAGGC CCTGCGCGAT
GCCAACGAAC GCCTTGAACA ACGCGTGGCG GAGCGCACCC ACGAACTGTC GCAGTTGAAC
CAGGCGCTGT CCGAAGCCAA GAGCCAGGCC GAAGCGGTGA GCAAGTCCAA GACCCGCTTC
CTGGCCGCCG TCAGCCATGA CCTGATGCAA CCGTTGAACG CCGCACGGCT TTTCTCTGCC
GCCTTGTCGC AACAGGCCGA GGGCATGAAC GAAGAGGCCC AGCAGTTGGT ACAGCACATG
GACAGCTCGC TGCGCTCGGC TGAAGAGCTG ATCAGCGACC TGCTGGACAT CTCGCGCCTG
GAAAACGGCA AGATCACCCC GGATGCCAAA CCCTTCGCCC TCAACGAGCT GTTCGACACC
CTGGGCGCCG AGTTCAAGCT GCTGGCGGCC GAGAAAGGCC TGGAGTTCCG CCTGCGCGGC
AGCCGCCTGC GGGTGGACAG CGACATGAAA CTGCTACGCC GGGTGCTGCA GAACTTCCTC
ACCAATGCCC TGCGCTACGG CAAGAGCCCG ATCCTGCTAG GCGCGCGCCG ACAGGGCGAG
CGCCTGTGGC TGGAGGTCTG GGACCGTGGC CCGGGCATTG CTGACGACAA GCTGCAAGTG
ATCTTTCAGG AGTTCAAGCG GCTGGACAGC CACCAGACCC GTGCCGAGAA GGGGCTAGGC
TTGGGCCTGG CCATCGCAGA CGGCCTGTGT CGGGTGCTGG GGCATCCGCT GGAAGTGCGC
TCATGGCCAG GCAAGGGCAC GGTGTTCCGC GTCAGCGTAC CGATTGCACG CCAGGCCGCC
GCGGCGCCAA GCGCGCCCGT GGAACAACAG GGCGGCCAGC CACTGGCCGG GTTGCACGTG
CTATGCGTGG ACAACGAAGA CAGCATCCTG ATCGGCATGA ACAGCCTGCT GAGCCGCTGG
GGTTGCCAGG TATGGACCGC GCGCAACCAG GCCGAATGCG AAGCCCTGCT GGCCAAAGGC
ATGCGCCCGC ACCTGGCATT GGTGGACTAC CACCTGGACG ACGGCGAGAC CGGCACCGGA
CTGATGGGCT GGCTTCGAGC ACGGCTGGGT GAGCCGGTAC CCGGTGTAGT GATCAGCGCC
GACGGCAGCA AGGAAACCAT CGCCCTGGTA CATGCATCAG GGCTGGACTA CCTGGCCAAA
CCGGTCAAGC CGGCGGCCTT GCGCGCCCTG CTCAATCGCC ATCTGAGCCT GGCTCAGTAA
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| Protein sequence | MSLSSGLIAV VALAYMAIMF AIAFYGDRRS TPLPPKLRAW VYSLSLAVYC TSWTFFGAVG
QAAEQLWAFL PIYLGPVLLL IFAPWVLQKM VLISKQQNIT SIADFIAARY GKSQTLAVVV
ALICLVGVLP YIALQLKGIV LGVNLLIGAN ADATGTRVQD TALVISLVLA LFAIVFGTRS
LDVTEHHRGM VLAIAFESLI KLLAFLAVGI FIVFNLYDGF DDLFSQARQS IHLQDYWKET
INWPSMVVQT AVAMMAIICL PRQFHVTVVE NIEPQDLRLA RWVFPMYLAL AALFVVPIAL
AGQMMLPGTV ISDSFVISLP LAEAHPSLAL LAFIGGASAA TGMVIVEAVA LSTMVSNDML
LPWLLRRNNA ERPFEAFRHW MLSVRRVTIV VILLLAYVSY RLLGSTASLA TIGQIAFAAV
TQLTPAMLGA LYWKQANRRG VFAGLAAGIF LWFYTLVLPI AAHSLGWSLQ LFPGLAWLHG
NPLNLPISPL TQGVVLSLAG NFTLFAWVSV LSRTRVSEHW QAGRFIGQQT SARPSSKPLL
AVQIDDLLTL ASRFVGEERA RQSFIRFAYR QGKGFNPNQN ADGDWIEHTE RLLAGVLGTS
STRAVVKAAI EGRDMQLEDV VRIADEASEV LQFNRALLQG AIENINQGIS VVDQNLHLVA
WNRRYLELFN YPDGLISVGR PIADIIRYNA ERGLCGPGEA QVHVARRLHW MRQGRAHSSE
RLFPNGRVIE LIGNPMPGGG FVMSFTDITP FREAEQALRD ANERLEQRVA ERTHELSQLN
QALSEAKSQA EAVSKSKTRF LAAVSHDLMQ PLNAARLFSA ALSQQAEGMN EEAQQLVQHM
DSSLRSAEEL ISDLLDISRL ENGKITPDAK PFALNELFDT LGAEFKLLAA EKGLEFRLRG
SRLRVDSDMK LLRRVLQNFL TNALRYGKSP ILLGARRQGE RLWLEVWDRG PGIADDKLQV
IFQEFKRLDS HQTRAEKGLG LGLAIADGLC RVLGHPLEVR SWPGKGTVFR VSVPIARQAA
AAPSAPVEQQ GGQPLAGLHV LCVDNEDSIL IGMNSLLSRW GCQVWTARNQ AECEALLAKG
MRPHLALVDY HLDDGETGTG LMGWLRARLG EPVPGVVISA DGSKETIALV HASGLDYLAK
PVKPAALRAL LNRHLSLAQ
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