| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4010 |
|---|
| Symbol | |
|---|
| ID | 5190714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4518911 |
|---|
| End bp | 4520251 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640588483 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001269318 |
|---|
| Protein GI | 148549216 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00893] d-galactonate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.835742 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.379616 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAGCA CGCCTACCCC CCGCGCCGCG TCGTCGTACA CGCTGGACGC GGCCCCTGCC
CAGCGCCTGC CTACCCGCCG CCGCTGGTTC ATGCTGTCGC TGCTGCTGGT GGCGACCATC
ATCAACTACG TCGACCGGGT GAACATTTCC ATCGCCGCGC CGTTCATGGC CAAAGACCTG
GGCCTGGACA AGGTCGAGAT GGGCCTGATT TTCTCCGCCT TCGCCTGGAC CTACGCGTTG
GCCCTGGTAC CGGCTGGCTT CATTGCTGAC CGCTTCGGCT CGCGCCTGAC CTATGGTGTG
TCGCTGATCA GCTGGTCGGC GGTCACCGTG GCCCAGGGCC TGGCCAGTGG CTTCGCCTCG
CTGTTCGGCC TGCGCCTGGC GGTCGGCGCC ATGGAGGCCC CGGCCTTCCC GGCCAACAGC
CGTGCGGTTA CGGTATGGTT CCCCGCCCGC GAGCGCGGCA TGGCCAGCAG CATCTACGTA
TGTGGCCAGT ACCTGGGCAC CGCGCTGTTC ACCGGCGCGC TGCTGTGGCT GGCGACCACC
TATGACTGGC GCCACGTGTT CTACAGCACC GGCCTGGTGG GCATCCTGTT CGGCGTCGTG
TGGCTGGTGC TGTACCGCGA CCCGCTGAAC TGCAAGAAGG TCAGCAAGGA GGAACTGGCC
TATATCGAGC ACGGTGGTGG CCTGGTGAAG AGCAGCCAGC AACGTACCCG CTTCGACTGG
CGACAGGTTG CCGAGCTGTT CCGCTATCGC CAGGTCTGGG CGATCTGCCT GGGCAAGTTC
GCCAGCACTT CGGCGCTGTA CTTCTTCCTC ACCTGGTTCC CCACCTACCT GATCGAAGAA
CGCCAGCTGA CGCTGATCAA GGTCGGCATC TTCGCGGTCA TGCCGTTCAT TGGTGCCACG
GTCGGCATCC TCCTGGCGGG CATCGTCTCC GACCTGCTGA TCCGCAAGGG TTACTCGCTG
TCGTTTGCCC GCAAGCTGCC GCTGGTGGTG GGCTCGATGC TGGGGATGTC GATCGTGCTG
GTGAACTTCA CCGACTCCAA TGTGCTGTGC ATCGCCGTGC TGACCCTGGC GTTCTTCGCC
CAGGGCATCG CCTCGTCGTC GTGGGCTGCC GTCTCGGAAG TGGCGCCAAA GGAGCTGATC
GGCCTGACCG GCGGCATTAC CAGCCTGGCG GCGAACATCG GCGGCATCGT CACACCGATC
GTGATCGGCG CGATCGTGCA CGCCAGTGGC TCGTTCGCCA TGGCGTTCTG GTTCATCGGT
GGTGTGGCGT TGATGGGCAC ACTGTCTTAC TCGTTGCTGC TTGGGAAGCT GTATCGCATC
GAGCTGAAGG CTGCGGGCTG A
|
|---|
| Protein sequence | MSSTPTPRAA SSYTLDAAPA QRLPTRRRWF MLSLLLVATI INYVDRVNIS IAAPFMAKDL
GLDKVEMGLI FSAFAWTYAL ALVPAGFIAD RFGSRLTYGV SLISWSAVTV AQGLASGFAS
LFGLRLAVGA MEAPAFPANS RAVTVWFPAR ERGMASSIYV CGQYLGTALF TGALLWLATT
YDWRHVFYST GLVGILFGVV WLVLYRDPLN CKKVSKEELA YIEHGGGLVK SSQQRTRFDW
RQVAELFRYR QVWAICLGKF ASTSALYFFL TWFPTYLIEE RQLTLIKVGI FAVMPFIGAT
VGILLAGIVS DLLIRKGYSL SFARKLPLVV GSMLGMSIVL VNFTDSNVLC IAVLTLAFFA
QGIASSSWAA VSEVAPKELI GLTGGITSLA ANIGGIVTPI VIGAIVHASG SFAMAFWFIG
GVALMGTLSY SLLLGKLYRI ELKAAG
|
|---|
| |