Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4009 |
Symbol | |
ID | 5190713 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4517686 |
End bp | 4518615 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640588482 |
Product | helix-turn-helix domain-containing protein |
Protein accession | YP_001269317 |
Protein GI | 148549215 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.125602 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.35131 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCCCCA AGCGCGAGGT TCCGACCTAT GTCATGCAGC AGCGCAGCGA GCTGATGGAT TTCTACATCC GCGACCAGCG CGGGCGTCCC GCCGAGACCG CGCCGCATCG TCATGAGTAC TTCCAGATCC AGGTCAATCT CGGCGGCGAC ACGGTGCAAC ACATCGGCAG CGTGCAACGC CCATTCAGAC GCAACACCCT GGCCTTCATC CTGCCTCACC GGGTGCATGT GATCCCGCAT CCGGAGGACA GCGACTTCGT GGTGATCAAT TTCTCCCAGA CGTTCCTGCT GCCGCACCTG GCCTGCGACC CGATGGACCT GGAGGAAGTG TCGATCCTGC AGGCGCCGGA GCTGTCGCCG TTCCGCTTTC AGGAGCATCT CGACTTCTAC CTGAGTGAGC CGGACTTTGC CGAGGTACGG CAAACCCTCG AGCGCATGCG TGCGCTGGAT GCCAACCGCC GTTTCGGCAC CCGCGAAATC CTCAAAGGCC TGTTGCTGCA GCTGATCGGC CAGGTCTGTG GCCTGTATGC CGAGCCGCTG CGCGAACTGG CCGACAGCAA CGCTGCCCAG CTCAGCCGCC GTGCTGCGCT GGGCCGCATG AGCGACTACC TGCGCCGGCA TATCGACGAC CCCGACCTGA ACCTGCAGAA AGTCGCTGCC GCCACCTACC TGTCGCCGAC CTACCTGACC CACTGGCTGC GCAAGGAAAT CGGCAAGACC TTCAGCGAGC TGGTGCTGGA GCGGCGCATG CACGCCGCAC GCAACTACCT GCTCAACGGC AGCCGCCCAG TGGGCGAGGT GGCGCGGCTT TGTGGCTTTG CGGACGAAGC CTACTTCTCT CGACGTTTCC GCCAGATCCA CGGCCTGCCA CCTGGCCAGT TCCGACGCCA GCAACGCGAC CCGGATACGC CGCAGGCGGC AATGCTTTAA
|
Protein sequence | MPPKREVPTY VMQQRSELMD FYIRDQRGRP AETAPHRHEY FQIQVNLGGD TVQHIGSVQR PFRRNTLAFI LPHRVHVIPH PEDSDFVVIN FSQTFLLPHL ACDPMDLEEV SILQAPELSP FRFQEHLDFY LSEPDFAEVR QTLERMRALD ANRRFGTREI LKGLLLQLIG QVCGLYAEPL RELADSNAAQ LSRRAALGRM SDYLRRHIDD PDLNLQKVAA ATYLSPTYLT HWLRKEIGKT FSELVLERRM HAARNYLLNG SRPVGEVARL CGFADEAYFS RRFRQIHGLP PGQFRRQQRD PDTPQAAML
|
| |