| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4000 |
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| Symbol | |
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| ID | 5192245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4508589 |
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| End bp | 4510703 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640588473 |
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| Product | carboxyl-terminal protease |
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| Protein accession | YP_001269308 |
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| Protein GI | 148549206 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00109251 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.679688 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGATC AATTGCCTCC ACGTCGAATC AGCATGAAGC ATTTCCTTCC AAGCACCGCA
CTGGCTGTGA TGATCGGCCT GGGCAGCCTC ACGCTCGGCG GCAATGCGGC GGCCGCCAAC
AAGTGGGACA GCCTGCAGCC CGACCGCGAC GAGATCGTCG CCAGCCTCAA CGTGGTGGAG
TTGCTCAAGC GCCACCACTA CAGCAAGCCA CCCCTGGACG ATGCCCGTTC GGCCATTATC
TACGACAGCT ACATCAAGCT GCTGGACCCG GCGCGCAGCT ACTTCACCGC TGCCGACATT
GCCGAATTCG ATAAATGGAA AACGCAATTC GACGATTTCC TCAAGAGCGG CAACCTGGAC
CCGGGCTTCA CCATCTACAA ACGCTACCTC GACCGCGTCA AGCAACGCCT GGACTTCGCC
CTGGCCGAGC TGAACAAGGG CGTGGACAAG ATTGACTTCA CCACCAAGGA AACCTTGCTG
ATCGATCGCA AGGACGCGCC GTGGATGAAG AACCAGGCCG AGCTCGACGA CTTGTGGCGC
AAACGCGTGA AAGACGAAGT GCTGCGCCAG AAGATCGCCG GCAAGGAACC CAAGCAGATC
CAGGAAACCC TGATCAAGCG CTACAAGAAC CAGCTCGCGC GCCTGGACCA GACCCGTGCC
GAGGACATCT TCCAGGCCTA CATCAACACC TTCGCCCAGT CCTACGACCC ACACACCAAC
TACCTGTCGC CGGACAACGC CGAAAACTTC GACATCAACA TGAGCCTGTC GCTCGAAGGC
ATTGGTGCAG TGCTGCAAAG CGACAACGAC CAGGTCAAGA TCGTGCGCCT GGTGCCAGCA
GGCCCGGCAG CCAAGACCAA GCAGGTGGCC CCGGCTGACA AGATCATCGG CGTGGCCCAG
GGCAACAAGG AAATGGTCGA CGTGGTGGGC TGGCGCCTGG ACGAAGTGGT CAAGCTGATC
CGCGGCCCGA AAGGTTCGGT GGTGCGCCTG GAAATCATCC CAGCCAGCAA TGCGCCTAGC
GACCAGACCA GCAAAATTGT GTCGATCACC CGTGAAGCGG TGAAGCTTGA AGAGCAGGCG
GCGAAGAAGT CGGTGCTCAA GCTCAAGCAG GACGGGCGTG ACTACAAGCT GGGCATCATC
GAGATCCCGG CCTTCTACCT GGACTTCAAG GCCTACCGCG CTGGCGACCC CGAGTACAAG
AGCACCACGC GTGACGTGAA GAAGCTGCTC ACCGAACTGC AGAAAGAGAA AGTCGACGGC
GTGGTCATCG ACCTGCGCAA CAACGGCGGC GGCTCGCTGC AGGAAGCCAC CGAGCTGACC
AGCCTGTTCA TCGAAAAAGG CCCGACCGTG CTGGTGCGCA ACAGTGACGG CCGCGTCGAC
GTGCTGGAAG ACGAAAACCC GGGGGCCTTC TACAAGGGCC CGCTGGCACT GCTGGTCAAC
CGCCTGTCGG CCTCGGCATC GGAGATCTTC GCCGGTGCCA TGCAGGACTA CCACCGCGCG
CTGATCATCG GTGGCCAGAC CTTCGGCAAA GGCACCGTGC AGACCATCCA GCCGCTCAAC
CATGGCGAGC TGAAGCTGAC CCTGGCCAAG TTCTACCGGG TTTCCGGGCA GAGTACGCAA
CATCAGGGGG TGCTGCCGGA CATCGACTAC CCCTCGATCA TCGACACCAA GGAAATCGGC
GAGAGCGCCC TGCCAGAGGC CATGCCGTGG GACACCATCC GCCCGGTGGT CAAGCCTGCG
GCCGATCCGT TCAGGCCGTT CCTGGCCCAG CTCAAGGCGC AACATGAGGC GCGCAGCGAC
AAGGATGCCG AGTTCACCTA CATCCGCGAC CGCCTGGCCC TGACCCAGAA GCTGATGAAC
GAGAAAACCG TCAGCCTCAA CGAGCAGGAA CGCCGCGCAC GCCACGACAG CGTCGAGGCC
AAGCAACTGG CGCTGGAAAA CACCCGCCGC AAGGCCAAGG GTGAAGAACC GCTGAAGGAA
CTGAAGAAAG AGGACGAAGA CGCTCTGCCG GTCGAGGATG AAAACACCAA GCCGGAAGAC
GACGCTTACC TCGCGGAAAC CGGTCGCATC CTGATCGACT ACCTCAGTGC CAGCACCAAG
GTGGCCAAGA AGTAA
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| Protein sequence | MRDQLPPRRI SMKHFLPSTA LAVMIGLGSL TLGGNAAAAN KWDSLQPDRD EIVASLNVVE
LLKRHHYSKP PLDDARSAII YDSYIKLLDP ARSYFTAADI AEFDKWKTQF DDFLKSGNLD
PGFTIYKRYL DRVKQRLDFA LAELNKGVDK IDFTTKETLL IDRKDAPWMK NQAELDDLWR
KRVKDEVLRQ KIAGKEPKQI QETLIKRYKN QLARLDQTRA EDIFQAYINT FAQSYDPHTN
YLSPDNAENF DINMSLSLEG IGAVLQSDND QVKIVRLVPA GPAAKTKQVA PADKIIGVAQ
GNKEMVDVVG WRLDEVVKLI RGPKGSVVRL EIIPASNAPS DQTSKIVSIT REAVKLEEQA
AKKSVLKLKQ DGRDYKLGII EIPAFYLDFK AYRAGDPEYK STTRDVKKLL TELQKEKVDG
VVIDLRNNGG GSLQEATELT SLFIEKGPTV LVRNSDGRVD VLEDENPGAF YKGPLALLVN
RLSASASEIF AGAMQDYHRA LIIGGQTFGK GTVQTIQPLN HGELKLTLAK FYRVSGQSTQ
HQGVLPDIDY PSIIDTKEIG ESALPEAMPW DTIRPVVKPA ADPFRPFLAQ LKAQHEARSD
KDAEFTYIRD RLALTQKLMN EKTVSLNEQE RRARHDSVEA KQLALENTRR KAKGEEPLKE
LKKEDEDALP VEDENTKPED DAYLAETGRI LIDYLSASTK VAKK
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