| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3988 |
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| Symbol | |
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| ID | 5194643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4496458 |
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| End bp | 4497093 |
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| Gene Length | 636 bp |
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| Protein Length | 211 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640588461 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001269296 |
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| Protein GI | 148549194 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.716973 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGCTGT CGAATGTCCA GATCCTCTTC GAAGACGCCG CCATCCTGGT GATCAACAAA
CCGACCCTGC TGCTGTCGGT ACCTGGCCGT GCCGAGGACA ACAAGGACTG CCTGATCACC
CGCCTGCAGG AAAACGGCTA CCCCGATGCG CTGATCGTGC ACCGTTTGGA CTGGGAAACC
TCCGGCATCA TCCTGCTGGC CCGCGATGCC GATAGCCACC GCGAGCTGTC GCGCCAGTTT
CACGACCGTG AAACCGAAAA AGCCTACACC GCGCTGTGCT GGGGCCAGCC GGCGCTGGAC
AGCGGCAGCA TCGACCTGCC ACTGCGCTAC GACCCACCGA CCAAACCACG GCATGTGGTG
GACCACGAGC AGGGCAAACA CGCCCTGACC TTCTGGCGTA TCGTCGAACG CTGCGGCGAT
TACTGTCGGG TGGAGCTGAC GCCGATTACC GGGCGTTCGC ACCAGCTGCG CGTGCACATG
CTGTCGATCG GGCACCCGCT GCTGGGTGAT CGGCTGTACG CCAACCCGCA AGCCCTGGCG
GCCCATGAGC GGCTGTGCCT GCATGCCTCG ATGCTGAGCT TTACCCACCC GGTGTCCGGG
CAGCGGTTGA AGTTCGAGTG CCCGGCACCG TTCTGA
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| Protein sequence | MPLSNVQILF EDAAILVINK PTLLLSVPGR AEDNKDCLIT RLQENGYPDA LIVHRLDWET
SGIILLARDA DSHRELSRQF HDRETEKAYT ALCWGQPALD SGSIDLPLRY DPPTKPRHVV
DHEQGKHALT FWRIVERCGD YCRVELTPIT GRSHQLRVHM LSIGHPLLGD RLYANPQALA
AHERLCLHAS MLSFTHPVSG QRLKFECPAP F
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