Gene Pput_3976 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3976 
SymbolactP 
ID5190557 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4484380 
End bp4486044 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content62% 
IMG OID640588449 
Productacetate permease 
Protein accessionYP_001269284 
Protein GI148549182 
COG category[R] General function prediction only 
COG ID[COG4147] Predicted symporter 
TIGRFAM ID[TIGR00813] transporter, SSS family
[TIGR02711] cation/acetate symporter ActP 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.900001 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.864966 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTCGCC AAACCAAAGC CCTGGCCGTA TTGGCCTGCG GAGCCTTCGC ACCCGCCGTG 
TGGGCCGCCG ATGCCCTGAC CGGCGAGGTG CAGAAACAAC CGCTGAACGT TTCCGCCATC
GCCATGTTCG TGGCCTTCGT CGCCTTCACC CTCGGCATCA CCTACTGGGC CTCCAAACGC
AACAAGTCGG CATCGGACTA CTACGCTGCC GGCGGCAAGA TCACCGGCTT CCAGAACGGC
CTGGCGATTG CTGGCGACTA CATGTCGGCC GCCTCGTTCC TGGGTATTTC CGCGCTGGTG
TTCACCTCGG GTTATGACGG CCTGATCTAC TCGATCGGCT TCCTGGTTGG CTGGCCGATC
ATTCTTTTCC TGATTGCCGA ACGCCTGCGC AACCTGGGCA AGTACACCTT CGCCGACGTG
GCCTCGTACC GCCTCGGGCA AAAGGAAATT CGCACCCTGT CGGCCTCCGG TTCGCTGGTG
GTGGTGGCGT TCTACCTGAT CGCGCAAATG GTCGGCGCCG GCAAGCTGAT CGAGCTGCTG
TTCGGTCTGG ACTACCATGT GGCGGTGATC CTGGTGGGTA TCCTGATGTG CCTGTACGTG
CTGTTCGGCG GCATGCTGGC CACCACCTGG GTACAGATCA TCAAGGCTGT GCTGCTGCTG
TCCGGTGCCA GTTTCATGGC GCTGATGGTC ATGAAGCACG TGGGCTTTGA CTTCAACACG
CTGTTCTCCG AAGCGATCAA GGTACACGCC AAGGGCGAGG CGATCATGAG CCCCGGCGGC
CTGGTCAAGG ACCCGATCTC GGCATTCTCC CTGGGCCTGG CACTGATGTT CGGTACTGCC
GGCCTGCCGC ACATCCTGAT GCGCTTCTTC ACCGTCAGTG ACGCCAAGGA AGCGCGCAAG
AGCGTGCTGT ATGCCACCGG CTTCATCGGC TACTTCTACA TCCTCACCTT CATCATTGGC
TTTGGCGCAA TCCTGCTGGT TAGCACCAAC CCGGAATTCA AGGACGCCGC AGGCGCTCTG
CTGGGTGGCA ACAACATGGC TGCGGTGCAC CTGGCCAATG CGGTGGGTGG CAGTGTGTTC
CTCGGCTTCA TCTCGGCGGT GGCCTTTGCC ACCATCCTGG CGGTGGTGGC TGGCCTGACC
CTGGCCGGTG CCTCGGCGGT GTCCCACGAC CTGTACGCCA GCGTCTGGCG CAAGGGCAAA
GCCAACGACA AGGACGAGAT CCGCGTATCG AAGATCACCA CTGTTGCCCT GGGTGTGCTG
GCGATCGGCC TGGGGATTCT GTTCGAGAAG CAGAACATCG CCTTCATGGT CGGCCTGGCG
TTCTCCATTG CGGCCAGCTG CAACTTCCCG GTACTGCTGC TTTCGATGTA CTGGAAGAAG
CTGACCACCC GCGGCGCCAT GATCGGCGGC TGGCTGGGCC TGGTGAGTGC GGTGACGCTG
ATGATCCTTG GCCCGACCAT CTGGGTACAG ATTCTCGGCC ACGAGAAGGC CATCTACCCG
TACGAGTACC CGGCGCTGTT CTCGATGGCC ATTGCCTTCG TCAGCATCTG GTTCTTCTCG
GTCACCGACA AGTCCAAGGC GGCTGAGGAT GAGCGCGCGC TGTTCTTCCC GCAGTTCGTG
CGTTCGCAGA CTGGCCTGGG TGCCAGCGGG GCGGTCTCGC ACTAA
 
Protein sequence
MIRQTKALAV LACGAFAPAV WAADALTGEV QKQPLNVSAI AMFVAFVAFT LGITYWASKR 
NKSASDYYAA GGKITGFQNG LAIAGDYMSA ASFLGISALV FTSGYDGLIY SIGFLVGWPI
ILFLIAERLR NLGKYTFADV ASYRLGQKEI RTLSASGSLV VVAFYLIAQM VGAGKLIELL
FGLDYHVAVI LVGILMCLYV LFGGMLATTW VQIIKAVLLL SGASFMALMV MKHVGFDFNT
LFSEAIKVHA KGEAIMSPGG LVKDPISAFS LGLALMFGTA GLPHILMRFF TVSDAKEARK
SVLYATGFIG YFYILTFIIG FGAILLVSTN PEFKDAAGAL LGGNNMAAVH LANAVGGSVF
LGFISAVAFA TILAVVAGLT LAGASAVSHD LYASVWRKGK ANDKDEIRVS KITTVALGVL
AIGLGILFEK QNIAFMVGLA FSIAASCNFP VLLLSMYWKK LTTRGAMIGG WLGLVSAVTL
MILGPTIWVQ ILGHEKAIYP YEYPALFSMA IAFVSIWFFS VTDKSKAAED ERALFFPQFV
RSQTGLGASG AVSH