| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3963 |
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| Symbol | mnmC |
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| ID | 5190956 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4469781 |
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| End bp | 4471745 |
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| Gene Length | 1965 bp |
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| Protein Length | 654 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640588436 |
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| Product | 5-methylaminomethyl-2-thiouridine methyltransferase |
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| Protein accession | YP_001269271 |
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| Protein GI | 148549169 |
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| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.94523 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0279642 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCC TCCTCCAGCA CGCCCAGATC GACTGGGACG ACCAGGGCCG CCCCCATTCG
CGGCACTATG ACGACGTCTA TTTCGCAGTC AACGAAGGCA TCGAAGAAAC CAAGCACGTG
TTCCTCGGCC AGACCCGCCT GGCCGAACGT TTTGCCCACC TGGCGCCGCA TGCCTGCACG
GTGATCGGCG AAACCGGTTT TGGCACAGGC ATGAATTTTT TCTGCGCCTG GCAGCTGTTC
GACCAGCACG CACACAGCGA CGCGCGCCTG CACTTCGTCA GCGTCGAGAA GTACCCCCTC
GACCACGCCG ACATGGCCCG CGCAGTGCGC CTGTGGCCTG AACTGGCCGC CTATACCGAG
CCGCTGCTGG AGCAATACGT GGCGGTGCAC CCGGGCTTTC AGCAGTTCAC CTTCGCCGGT
GGCAGGGTCA CCCTGACCCT GTTGATAGGC GATGTGCTGG AACAGCTGCC GCAACTTGAT
GCGCAGATCG ATGTGTGGTT CCTCGACGGC TTCGCCCCCG CCAAGAACCC CGACATGTGG
ACCCCGGAGC TGTTTGCGCA ACTGGCCCGG CTATCGCATC CGGGCACGGT GCTGGGTACC
TTCACCACCA CCGGCTGGGT ACGTCGCAGC CTGGTCGAAG CCGGCTTCGC CATGAAGAAG
GTGCCAGGCA TCGGCAAGAA GTGGGAGGTG ATGAGCGGCG CCTACGTCGG CCCCCTGCCC
GGCCCATGCG CGCCTTGGTA CGCGCGCCCC GCGGTGACAC AGGGGCCGCG CGAGGCGCTG
GTGATCGGTG CCGGACTTGC CGGCAGCAGC AGCGCCGCCA GCCTGGCCCG GCGCGGCTGG
CAGGTAACCG TGCTGGAGCG CCACGAAGCC CCGGCCCAGG AAGCTTCAGG CAACCCGCAA
GGGGTGCTGT ACCTCAAGCT GTCTGCCCAT GGCACCGCGC TGTCGCAGAT GATCCTGTCC
GGGTTCGGCT ACACCCGGCG TCAGCTGCAG CGCTTGCAGC GTGGCCGTGA CTGGGATGCC
TGCGGGGTGC TGCAACTGGC CTTCGACAGC AAGGAGGCCG AACGCCAGGG CAAGCTGGCT
GCCGCCTTCG ACCCCGGCTT GCTGCACTGC CTGGCGCGCG CCGAGGCCGA AGCCATCGCC
GGCGTGGCGT TGCCTGGCGG CGGGTTGTTC TACCCCGAAG GTGGCTGGGT GCACCCGCCA
GCGCTGTGCC AACAGCAGTT GCAGCACCCT GGTATTCGCG TGGTGACCCA CCAGGACGTG
CTCGAACTGC GCAAAGTGGA TGAGCATTGG CAAGCCTGGG CTGGCGACCA GCTGTTAGCC
CGCGCTCCAG TGGTGGTCCT GGCCGGTGCG GCGGATGTGC TGCGCTTCGA ACCTTGCGCG
CAGTTACCAC TCAAGCGCAT CCGTGGGCAG ATCACCCGCT TGCCGGCCAC CGCCAGCAGC
CAGGCACTGC GCACCGTGGT GTGCGCGGAA GGCTATGTGG CACCGCCACG CGAGGGTGAA
CATACACTGG GCGCCAGTTT TGACTTCCAT AGCGAAGACC TTGCACCGAC GGTGGCCGAG
CACCAGGGCA ACCTGGCGCT GCTGGACGAA ATTTCCGTCG ATCTGGCGCA ACGGCTGGCT
GTGGCTGAAC TGGACCCCGA GCAATTGCAG GGACGTGCTG CGTTCCGTTG CACCAGCCCG
GATTACCTGC CGATCGTCGG GCCCATCGCC GACGCGCAGG CGTTTGCCGA AGCCTATGCA
GTACTGGGCC GGGATGCGCG GCAAGTACCG GATGTGCCCT GCCCTTGGCT GGGCGGGTTG
TATGTGAACA GCGGGCATGG CTCACGCGGG TTGATAACAG CGCCCTTGAG CGGCGAGCTG
GTGGCGGCCT GGGTATGTGG CGAACCGCTG CCATTGCCGC GGGCAGTGGC GCAGGCGTGT
CATCCGAACC GGTTTGGATT GCGCCGGTTG ATCCGGGGGA AATGA
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| Protein sequence | MPTLLQHAQI DWDDQGRPHS RHYDDVYFAV NEGIEETKHV FLGQTRLAER FAHLAPHACT
VIGETGFGTG MNFFCAWQLF DQHAHSDARL HFVSVEKYPL DHADMARAVR LWPELAAYTE
PLLEQYVAVH PGFQQFTFAG GRVTLTLLIG DVLEQLPQLD AQIDVWFLDG FAPAKNPDMW
TPELFAQLAR LSHPGTVLGT FTTTGWVRRS LVEAGFAMKK VPGIGKKWEV MSGAYVGPLP
GPCAPWYARP AVTQGPREAL VIGAGLAGSS SAASLARRGW QVTVLERHEA PAQEASGNPQ
GVLYLKLSAH GTALSQMILS GFGYTRRQLQ RLQRGRDWDA CGVLQLAFDS KEAERQGKLA
AAFDPGLLHC LARAEAEAIA GVALPGGGLF YPEGGWVHPP ALCQQQLQHP GIRVVTHQDV
LELRKVDEHW QAWAGDQLLA RAPVVVLAGA ADVLRFEPCA QLPLKRIRGQ ITRLPATASS
QALRTVVCAE GYVAPPREGE HTLGASFDFH SEDLAPTVAE HQGNLALLDE ISVDLAQRLA
VAELDPEQLQ GRAAFRCTSP DYLPIVGPIA DAQAFAEAYA VLGRDARQVP DVPCPWLGGL
YVNSGHGSRG LITAPLSGEL VAAWVCGEPL PLPRAVAQAC HPNRFGLRRL IRGK
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