Gene Pput_3958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3958 
Symbol 
ID5190412 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4463535 
End bp4464059 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content63% 
IMG OID640588431 
Producthypothetical protein 
Protein accessionYP_001269266 
Protein GI148549164 
COG category[S] Function unknown 
COG ID[COG3184] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.309289 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0283317 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGTC TCCGTGTCCT TTGTGCCGCC GTTGCCCTGG TTTGCGCCAG CGGCCAGGTA 
CTCGCTGCCA CCGCCAGCCA CAACGCTGCT GCCGAGAAAT TCCTGACCCT GGCCAACGCC
GACAAGCTGG GCACCCCGGT GTACATGCAA GTGCAGCAGA TGTTCGCCCA GCGTTTCGCC
CAGACCAAGG CCCCGGCCGC CAAGCAGCCG GTGCTGGAAA GCTACCAGGC CAAGGCCAAT
GCCGCGCTGG ACAACGCCAT CGGCTGGAAC AAGCTGAAGC CGAAGATGGT CGACCTGTAC
ACCCGGACCT TTACCGAGCA GGAGCTGAAG GACCTGGTCA AGTTCTACGA ATCGCCGCTG
GGCAAGAAAG TGCTACGTGA AATGCCCAAG GTCACCCAGC AGTCGGCACA GCTGACCCAG
CAGAGCCTGG AGCCCGCAGT ACCGGTGGTG AACAAGCTGC TGGAAGACAT GACCAAAGAG
CTGGACCCGA ACGCAGGCAA GGCCGCCGCC CCAGCGAAGA AGTGA
 
Protein sequence
MTRLRVLCAA VALVCASGQV LAATASHNAA AEKFLTLANA DKLGTPVYMQ VQQMFAQRFA 
QTKAPAAKQP VLESYQAKAN AALDNAIGWN KLKPKMVDLY TRTFTEQELK DLVKFYESPL
GKKVLREMPK VTQQSAQLTQ QSLEPAVPVV NKLLEDMTKE LDPNAGKAAA PAKK