| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3936 |
|---|
| Symbol | |
|---|
| ID | 5194920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4435005 |
|---|
| End bp | 4437017 |
|---|
| Gene Length | 2013 bp |
|---|
| Protein Length | 670 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640588409 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001269244 |
|---|
| Protein GI | 148549142 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.218283 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCG ATAACCTGTT GGACAGGCTG CGAGTTTTCT TGGTCGCGTT GCCGAGGCGC
CAGAAGAGGC TGATTCAGGT CGTAACTGAT GTTTTGCTCA TTTGGCTTGC CCTCTGGCTT
GCATTTCTCG TGCGCTTGGG CATCGATGAT CTTTCCGGTC CGCTCAAAGA GCACGCATGG
TTGTTCGCCT TCGCTCCAAT CGTGGCCATT CCGCTTTTCA CACGGTTTGG AATGTACCGT
GCGGTCATGC GTTATTTTGG CAATGACGCA CTGATCGCCA TCATCAAGGC GGTCAGTCTC
TCGTCGTTGA TACTTTCCGT GGTCGTTTTC TGGTACAGCA ATCATCAGGC GATCGTGCCG
CGGTCGATCG TCTTCAATTA CTGGTGGTTG AGCCTGGTCA TCATCGGTGG TTTGCGGTTG
CTGATGCGCC ACTATTTTAT GGGGGACTGG TTTGCCGGCG CTCACGTGAT GCCTTTTGCG
GGCCGAGATG ACGGCTTGAC CAAGGTCGCC ATCTACGGAG CTGGAACAGC GGGCAACCAA
TTACTGGCCG CCTTGCGCAT GGGCCGTCTG ATGCGCCCGG TGGCTTTCCT CGACGATGAT
GGCGACTTGT CCGGGCGGGT CATTTCCGGT TTGCAGGTCT ACAAGCCCAA GCACCTTCAG
CAACTGATCA ATGAAACGGG CGCTCAGGAA ATCCTACTGG CGCTGCCTTC GGCTACGCGG
GCGCGCCGAA AAGAAATTCT TGGCTTCCTC GAGCCGTTCC CTTTGCATGT GCGCAGTGTT
CCTGCTTTTG CCGATCTTGC TAGCGGCAGG GTGAAGGTAG GGGATATTCA AGACGTCGAC
ATCGCCGATT TGCTCGGGCG CGATGCAGTG CCTGCGCAAA AAGAGTTGCT GGTGCGTTGC
ATTGAGAAAC AGACCGTTCT GGTAACGGGG GCAGGCGGCT CGATCGGCTC CGAGCTGTGC
AGGCAGATCA TTGGCCTGGG CCCCAAGACG CTGCTGCTGT TCGATCATAG CGAGTACAAC
CTCTACACTA TCCTTTCTGA ACTTGAGCAG CGCATCAGCC GCGAGTCATT GTCCATACGT
TTGTTGCCAA TCCTCGGTTC TGTTCGTAAT CAGGCACACC TGCTGGATGT CATGAAAGCC
TGGCGTGTGG ACACCGTCTA TCACGCGGCG GCCTACAAGC ATGTGCCAAT GGTCGAGCAC
AATATGGCAG AGGGTGTGCT GAACAATGTC ATCGGTACCC TCCACACTGC ACAGGCGGCA
CTGCAGGCAG GCGTCGCCAA TTTCGTGCTT ATCTCCACGG ACAAAGCGGT ACGCCCCACC
AATGTGATGG GCAGCAGCAA AAGGCTTGCA GAAATGATTC TGCAAGCTTT GAGTCGTGAA
ATGGCGCCGG TCATGTTCGC TGACAGTGGC AAGGTATCCA GGGTCAACAA AACGCGCTTT
ACCATGGTTC GTTTTGGAAA TGTGCTGGGT TCGTCGGGCT CGGTTGTGCC GCTATTTCAT
AAGCAGATCA AATCTGGGGG GCCTCTCACG GTCACGCACC CCAAGATCAC CCGCTATTTC
ATGACCATTC CCGAGGCTGC GCAACTGGTG ATCCAGGCCG GGTCGATGGG AACGGGCGGG
GATGTGTTCG TGCTCGATAT GGGTGAACCG GTGCGCATCG TTGAACTCGC CGAAAAGATG
ATCCACCTGT CTGGCCTGAG TGTGCGTTCA GAGCGCAATC AACAGGGCGA TATTGCCATC
GAGTTCACGG GATTGCGGCC GGGTGAAAAA CTGTATGAAG AATTGCTGAT TGGTGATCAG
GTAGTGAGCA CGGACCATCC GATGATCATG GCTGCGCATG AGGATCACCT GTCCTGGGAT
GTGCTCAAAG ATAAGCTTTC CGCGCTGCTC GCAGCGATTT CCACGGATGA TTATGTTCGT
GTCCGGCAGT TGCTGCGTGA AACGGTCAGC GGTTATTCGC CTGACGGTGA GATTGTTGAT
TGGATTCACA CCCAACGCAG GGTCGATTCT TGA
|
|---|
| Protein sequence | MSGDNLLDRL RVFLVALPRR QKRLIQVVTD VLLIWLALWL AFLVRLGIDD LSGPLKEHAW
LFAFAPIVAI PLFTRFGMYR AVMRYFGNDA LIAIIKAVSL SSLILSVVVF WYSNHQAIVP
RSIVFNYWWL SLVIIGGLRL LMRHYFMGDW FAGAHVMPFA GRDDGLTKVA IYGAGTAGNQ
LLAALRMGRL MRPVAFLDDD GDLSGRVISG LQVYKPKHLQ QLINETGAQE ILLALPSATR
ARRKEILGFL EPFPLHVRSV PAFADLASGR VKVGDIQDVD IADLLGRDAV PAQKELLVRC
IEKQTVLVTG AGGSIGSELC RQIIGLGPKT LLLFDHSEYN LYTILSELEQ RISRESLSIR
LLPILGSVRN QAHLLDVMKA WRVDTVYHAA AYKHVPMVEH NMAEGVLNNV IGTLHTAQAA
LQAGVANFVL ISTDKAVRPT NVMGSSKRLA EMILQALSRE MAPVMFADSG KVSRVNKTRF
TMVRFGNVLG SSGSVVPLFH KQIKSGGPLT VTHPKITRYF MTIPEAAQLV IQAGSMGTGG
DVFVLDMGEP VRIVELAEKM IHLSGLSVRS ERNQQGDIAI EFTGLRPGEK LYEELLIGDQ
VVSTDHPMIM AAHEDHLSWD VLKDKLSALL AAISTDDYVR VRQLLRETVS GYSPDGEIVD
WIHTQRRVDS
|
|---|
| |