Gene Pput_3921 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3921 
Symbol 
ID5193544 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4408325 
End bp4415824 
Gene Length7500 bp 
Protein Length2499 aa 
Translation table11 
GC content66% 
IMG OID640588394 
ProductBeta-ketoacyl synthase-like protein 
Protein accessionYP_001269229 
Protein GI148549127 
COG category[C] Energy production and conversion
[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases
[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3321] Polyketide synthase modules and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.802024 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATCAAGC GTAGAAAGGT TGCAATCGTC GGTTGTGCGT ACCGTTTTCC TGGCTCTTCC 
AATGCGGGCT TCTGGCAAAA CCTGATGGAG GGCCGCGACC TGGTGACCCA GGTTGACCCG
TCGCGCTGGA ACAAACGCGA GTTCCTGCAC CCGGACAAGG CCAGCCCTGC AACCAGCTAC
ACCTTCGCCT CAGGCACCTT GGGTGATATC AGCGCTTTCG ACGCTGGCTT CTTCAGCATC
TCGCCGCGTG AAGCCGCGAT GATGGACCCG CAGCAGCGCA TGTTGCTGGA AATGTGCTGG
GAAACCTTCG AAAACGCCGG GGTCAAGCCG TCCAGCCTGC GTGGCAGCAA CTGTGGCGTG
TACCTGGGCA TCGCCGGTGT CGAGCAGTCC TACCGCCTGC TCGAGGACCT GTCGGCCATC
GATGGCGCCA CGGCGACCGG CAACACCATG AGTATCGCGG CCAACCGCCT GTCGTTCTTC
TACGACCTGC GAGGCCCGAG CATGGCCATC GACACCGCCT GCTCGTCGTC GCTGGTGGCC
TTCCACCAGG CGTGCCAGGC CATCCTCAGC GGTGATGTCG ACCAAGCCGT GACGGGCGGT
ATCAGCCTGC ACATGCACCC GTTCGGTTTC ATGATCTTCG CCAAGGCGAC CATGCTGTCG
CGCACCGGGC GCTGCCAGTC GTTCGACGAA AACGGCGACG GTTACGCCCG CTCCGAAGGC
GGCGGGTTGT TCCTGCTCAA GGACTATGAC CAGGCAGTGG CCGACGGAAA CACCATTTTG
GCGGTGGTGG CGGCCAGTGC GGTGAACACC GACGGGCGCA AGTCCAGCCT GACCCTGCCC
AATGCCGAGG CCCAGGCGGC GTTGCTCAAG CGCGCCTACA CCCAGGCCGG CATCGCCCCC
GAGCAGTTGG ACTACCTGGA GGCCCACGGC ACCGGTACCG CTGTGGGGGA CCCAATCGAA
ACCCGCGCCA TCGGCGAGGC GCTGGGCCAG GCGCGCGGCG CCGGTAACCC GCTGCCAATC
GGCTCGGTGA AAAGCAACCT CGGGCACCTT GAAGCCGCCT CTGGCGTGGC TGGCCTGATG
AAGGCACTGA ACTGCCTGGC TGAGCGTACC GTGCCCGCTA CCATTGGCGT GCAGGCGCTC
AACCCGAACA TCGCGTTCGC CGACCTCAAC CTGCAGGTGG TCACCGAGCC CCTGCCGCTG
AAAGCCGATG GCCAGTTGAC CGTGGGGGTG AACTCGTTCG GCTTTGGCGG CGCCAACGCC
CATGTCATCC TGCAAAGCCC CGAGCTACAG GCGCCGGTAA CGCAAGCGGC CAGCGCCCGG
CGCGTGCCGT TACTGCTCAG TGCCAAGAGC GAAGAAGGCC TGCGCGCAAC CGCAGAGCGC
TTTGCCGCCT ACCTGGCCGG GCAGCCGCAG GCCGACTATT ACGATGTGGC CTACCAGGCG
ATGTTCCGCC GGGATGCGCA CAGCCATCGC CTGCTGCTGG TTTGCGACAC TGCAGCCGAA
GCTGCCCAGG CGCTGGACGA CTATGCCCAG GACCCGACCC TCAGCGAACT GAGCGCAGTG
CTGGAGGCCG GCCAGGCCCT GGACGGCGCC TCGGCACCGG TATTTGTCTA TTCCGGCAAC
GGCTCGCAAT GGCAGGGCAT GGGCCGGGCG ATGCTCGACC AGCCGCTGTT CGCCGCCGCC
GTGGATGAAG TGGACGCGTT GTTCCAGCCC TTGGCGGGCT ACTCGCTGCG CGCCGAGCTG
CTGGGTGATA ACGGCGAAGG CCGCTATGCA CGTACCGAAA TCGCCCAGCC TGCGCTGTTT
GCCCTGCAAG TGGCGGTTAC CAAAGTGCTG GCTGCCGAAG GCATCCACCC GGTGGCGGTG
ATTGGCCACA GTGTGGGTGA AGTGGCCGCG GCCTGGGCCA GCGGCGCGTT GAGCCTGGAG
GACGCCACCC AGGTCATCTA CCACCGCAGC CGCCTGCAGG GCCTGACCCG TGGTACCGGT
AAGATGACGG CGGTCGGCCT CTCGGGTGAA GCCACGGCGC AGCTGATTGC CGAACTGAAA
CTGGACGGCC GCCTGGTGGT GGCGGGCGAG AACAGCGCCC GCGGCGCCAC TGTGGCCGGT
GAGGTCGACG CCCTGGCACT GCTGGAGGCG GCCCTGGAAG AGCGCCAGGT ATTCGCCCGT
CGCCTGGACC TGGACTACGC CTTCCACTCG CCGGCCATGG ACCCGATCAA GCAAGCGGTT
ATCGACGACC TCGCGCATAT CCGCCCGCAG GCTACGAAGA TTCCGTTCTA CTCCACTGTT
GTTGGTGGCC AGTTGAACGG CGAACGCCTG GACAGCCAGT ACTGGTGGCA GAACATTCGC
TTCCCGGTGC TGTTCCAGGG CGCGCTGGCT GCCTTGGTGC GCAATGGCCT TAACCTGTTC
GTCGAAGTGG GCCCGCATGC GATTCTGCGC AGCTACGTCA GCGATGTGCT GGTCGAGTGC
GAACAACCGG GGCAGGTGAT TGGCACCCTC AAGCGCAACG ACCACAGTCC GCTGCTGCTG
GAACGTACCG TAGCTCGCCT GCAGATTGCC GCCGTGGAGC CAAAGTGGCA GGCACGCTTC
CCGGTGACGG GGCGCCCGCT GCGCCTGCCT AACTACGCCT GGCAGCGCGA TCACTTCAGC
TTGCCGGTCA CTGCCGAGGC CTATGGCCCG CTGAGCCACG AGCGCGTGCA CCCGTTGCTG
GGTTACCCGG TAACAGACCA GGCGCTGACC TGGGAAAACC GCCTGGATAC CCAGCAGTAC
CCGACCCTGG CCGACCACAA GGTGGGTGAG TCGGTACTGT TCCCGGGTGC AGGCTTTACC
GAGCTGGCCC TGGCGGTGGC GCAACTGCAC CAGCCGGGCG AGTTCGTCGA TATCGAAGAG
CTGGAAATCC ACAACCCTCT GCTGCTGAGC AGCGAGGTCA GCAAGAAAGT GCGCGTGCAG
GTGGAAGAGG CCGATGGCAC ATTGCGCATC AGCTCGCGCA CGTTGATGCA ACGCGAAGAC
TGGGTACAGC ACGTGGTCGC ACGCTTGCCG GGCGAAGCGC GCGGTGTGCT ACTGGACACC
CGGGCACCGG CGTTGCCAGC CCGCCCGGCA GACTTCACCG GCGAGCAGCA CCTGGCAATG
ACCTGCGCGG TTGGCCTGAA CTACGGCCCC GCTTACCAGA CGGTGGCCGC AGCCTGGGTG
GAAGGGGAGC GCGTGCTGGC TCAGTTGGTC GTGCCTGCTG CCATCGAACA CGAACTGGCA
AGCCTGCACC TGCACCCGGC GCTGCTGGAT GGTGCCTTCC AGCTGATTAC CGAGCTGCTG
GCCAGCCGCC AGGGGCATGA CGATGGCCTG GCGTTCATCC CCGTCAAGCT TGGGCGCATT
GCCTTTACCA ATGCTGGTGG TGTGCCGGTG CTGGCCGAGG TGCGCCAGCG CAAGCGCACC
GCGCATTCGC TGCTGGTCGA CTTCACCCTG TTCGATGCCA GCGGCGCTGC CGTGCTGGCA
ATCAAGGATG CGCGCATGCG TGCCGTGCGC CTGCAGTACG ACCGCAGTGG CGACATCAAG
CGTATGGGCC ATGTGGGGCA GGCCGCGCCA GGCGCGGTTG TGCCTGTGCA GCGTAACGCC
GTGGCCTGCT CGCCGCTGGC TGAGGCCTTG CAGTGCCTGG CCGACGAGCC GGCACAGGTG
CGTTACCTGA ATGAAGTGGA GCCACTGCTG GATGTGCTGT GCAGCAGCTT TGTCCTCGAT
GCGGTGGAAC AGGCCGGCGG CCGCATCAGT GCCGAGCAGG TCGCGCAGTG GTCGCAGGGC
CAGGGCGACT TCCTGGCGAT GCTGTTGCGC CATGCCGAGC ACGACGGCAG CCTGCAGCGT
AGCGCGGACG GCAGCTGGCA ATTGGTCGAC CAGGGCGAGC GCCCGACCTC GCAGGTTATC
TGGCAAGAGC TGTTCAGAAG CTACCCCGAG TACTTCCAGA TTATCCATTC CGTGGGCCGT
ATCGGCCGTC ATCTGTCGGC GTTGCTGGAT GGCAGCCAGG CCTTCGACAC TCTGCAACCG
CGCGAAACCA GCGGTGCCAG CCTGGCGCGC CTGGTGCTGG GTGCGGCAGG GCAGCAGCAC
CTGCTCAGCG GCATTGGCCA GACCCTGGCC GCGCGCCTGG CGCAACTGCC GCCCGGCCAG
CGCCTGCGGG TGCTGGAATT CGGCTTCGGT GGCGCTTCGT TTGCCGAGCT GTTGTACGCC
GGTCTGGATT TCGATCGCCT CGATTATGCC TACTGCGTCG CCGAGCCTGA GCTTGAGCAG
CGCCTGCGTG ACGATTGCCC GGCGTTGGAG GTACTTGGCC TGGAGCAACT GGCCGAAGCC
GGTACGTTCG ACTGGGTGCT GGTGCCTACC GACTTCGGCC CCCTTGGTAC GGTGGGTGAC
GCCCTGCGCC TGGCCAGTGG TCGGCTCAAC CCGCACGGCC AGTTGGCGCT GCTTGGGCAG
TACCCGGCGC GCTGGGCCGA TTTCGTCTTC GGTGCCCAGC CAGATTGGTG GCTGGCCGGC
CCGCAGCAGG CGTTGTCGCG CCAGCAAGGC CCGGCGTTCT GGAGCCATGA GCTGCAGCGG
CATGGCCTGA CCGCGCTGCG CACGCTGGAG GCGTTGCCGG GTAACGCCTG TGGTAGCTAC
CTGTTGCTGG CGGACAAGCC CGCCGGTGCT GACACTGCTG CACCCGTGGC CGTGCAGCGC
TGGGCCGTAC TCGCCGAAGC CGGGCAGGGC GCAGCCCTGC GCCTGGCACA GCAACTGCGC
GCCCAGGGCC AGCAGGTTGA CCTGTTGCAG CCGGGTGACG CCCAGGCGCT GGCGGCCCAG
CTTGGCGCCT TTGCCCAGCC CCCTGAGCAT GTGCTGCACC TGGCTGGTTT CGACAGCGGC
ACAGGCCTCG ATGGCCAGGC CGAGCGCTGC ATGCAAGCGG CCGCGCTGGT GCAGGCCTGT
GAGTCGCTGA CGATCGCCCC GCAGTGCTGG CTGTTCAGCC GTGGCGCTGC CGAGCACCTG
TACAGCGTCG ACACCGCCGC TGAGGTTGCG GCCATCGGCG ACGCCGCCTT GTGGGGCTTT
GGCCGTACCC TGGCCAACGA ATCCCCGCAC TGTCGTATTC GCCTGCTCGA TCTGGCCCAC
GCGGCAGCGG TCGAGCTGGC GGTACCTGCG TTGCTGCACG CCGACAGCGA AACCGAGCTG
GCCCTGGACG CCGAAGGCCG TCGCTACGTG CCGCGCCTGC GCGTGCTGGC CGACCAGCCG
CGCCGCGCAG TGGGCGATGC ACAGTGGGTG TGCCTGGGCT TCGACCTGCC GGGCCAGCTG
CGCAACCTGC GCTGGGAGGT GCGTGAGCCG CGTCAACCGG CGGCGGATGA GCTGGACATT
CAGGTGCGTG CGACGGGCCT TAACTTCCGT GACGTGATGT TCGCCCTCGG CCTGCTGTCG
GATGAAGCCA TCGAAAACGG CTTCTCCGGC CCTACCTTGG GCTTCGAATT TGCCGGTGTG
GTGCAGGGCA AAGGCGCCGA GGCAGTGGGC GACTTCGCCC CGGGTGACCG TGTGGTGGGC
TTTGGCCCCT GCAGCTTCGC CAACCGCCTG GTCACCAACG CCAACGCCGT TGCACGCATC
CCCGAAGGGA TGTCGTTCGA AGCGGCGGCC ACCATTCCGA GTACCTTCTT CACCGTGTAC
TACGCGCTGC ATCACTTGGC GCGCCTGGAG CCGGGCGAGA AGGTGCTGAT CCACGGCGCT
GCCGGTGGCG TGGGCATCGC GGCCATCCAG ATCGCCAAAT GGCTGGGCGC AGAAATTCAC
GCCACCGCAG GCAGCGACGA GAAGCGCGAC TTCCTGCGCC TGCTGGGCGT CAGCCACATC
TACGACTCCC GTTCGCTGGC GTATGCCGAC CAGGTGCTGG CAGCCACCGG TGGGCGTGGC
GTGGACGTGG TGCTCAATTC GCTGGCCGGT GAGGCCATCA ACCGCAACCT GCAGGTGCTG
AAGCCGTTTG GTCGCTTCCT GGAGTTGGGC AAGCGCGACT TCTACCAGAA CACCCGTATT
GGCTTGCGCC CGTTCCGCAA CAACATCAGC TATTTCGGTA TCGACGCTGA CCAGCTGATG
AGCGAGCGCC CCGCGTTCAC CCGCCGCCTG TTCGCCGAGA TGATGGAACT GTTCGAGCAG
GGCATCCTGC ACCCGTTGCC GTTCCGCGAG TTCGACGCCA ACCAGGTGGT CGAGGCCTAC
CGTTACATGC AGCAGGCGCG GCAGATTGGC AAGGTCGTGG TGACGTACGC CAACCCGATC
CAGCAAACCG TCGACACCCG CGTGCAGCCG GTGCGGGCAC TGCAGCTTGC CGCCGATGCC
AGCTACCTGG TCACCGGCGG CCTGGGTGGC TTTGGCTTGC GTACTGCGCA GTGGCTGATC
GACAAAGGTG CCCGTCACCT GGTGTTGCTG GGCCGTCGTG GCCCGGCCAG TGAAGAGGCC
CAGCCGCAGC TGGCGTTGTG GCACGCCCAA GGTATCGATG TGCAGGCCGT GGCGTGCGAC
ATCACCGACC GTGAGCAACT GCGCGGGGTG TTTGATCGCA TTGCCGCCAG CCCATGGCCA
CTGCGTGGCC TGGTGCACGC CGCGACGGTG ATTGACGACA GCCTGATCCG CAACCTTGAC
GGCGACCAGT TGCGTCGCGT GCTGGAGCCC AAGGCCAAGG GTGCGCAGTA CCTGCACGAG
CTGACCCAAG GCCTGGCGCT GGACTTCTTC GTGATGTTCT CCTCGGCCAC CACCTTGTTC
GGCAACCCTG GCCAGGCCAA CTACGTGGCG GCCAACCACT GGCTCGAAGC CCTTGCGCGG
CACCGTCGTG CTCAGGGCCA GGCAGCCACT GCCGTGCTGT GGGGCGCCAT CGACGATGTC
GGTTTCCTGG CGCGCAACAG CCAGATCAAG GACGCCCTGC AGAGCCGCAT GGGGGGCTCG
GCGCTGCGGG CTGAGGCAGC CTTGGCACAG CTCGAGGCCA TGCTGTTGCA GGGTGATAAC
GGCCATGGCG TGCTGGAGCT GGACTTCAAG GCCCTGGCGC GCTTCCTGCC GAGCGCCACT
ACACCGCGCT TCAGCGAACT GGCCCGTGCC TATGGCGGCG ACCATGAGGA TGAAGGGGGC
GGTGAAGACA TCCAGCGCAT GCTGGAGGAG CTTGACGATG GCGAACTGCT CGAACGCTTC
GTAGACATGC TCAAGCACGA GGTGTGCGAG ATTTTGCGCC TGCCGCCCGC ACGCCTGGAT
GCCCAGCGCC CGCTGCAGGA AATGGGGCTC GATTCGTTGA TGAGCGTTGA GTTGGTGGTG
GCGCTGGAAG AGCGTTTCGG TATTCGCTTG CCGGTGATGG AACTGAGCGA CAGCTCCAGC
ATCGACAAGC TTGCCGTACG CTTGCTGGAG CTGCTGCGCG GTGAAGCGAG CAGCGGGGAA
GAGCAACTGG CGCAGAATGT GCTTGCCCGC CATGGCAGCG AGCACAGTGC CGAAGAGTTG
GCGCAGTTGA ACGCAGCCTT GGCCGACAGC AACGCGGCAC CCAACCGATT GATTGATTAA
 
Protein sequence
MIKRRKVAIV GCAYRFPGSS NAGFWQNLME GRDLVTQVDP SRWNKREFLH PDKASPATSY 
TFASGTLGDI SAFDAGFFSI SPREAAMMDP QQRMLLEMCW ETFENAGVKP SSLRGSNCGV
YLGIAGVEQS YRLLEDLSAI DGATATGNTM SIAANRLSFF YDLRGPSMAI DTACSSSLVA
FHQACQAILS GDVDQAVTGG ISLHMHPFGF MIFAKATMLS RTGRCQSFDE NGDGYARSEG
GGLFLLKDYD QAVADGNTIL AVVAASAVNT DGRKSSLTLP NAEAQAALLK RAYTQAGIAP
EQLDYLEAHG TGTAVGDPIE TRAIGEALGQ ARGAGNPLPI GSVKSNLGHL EAASGVAGLM
KALNCLAERT VPATIGVQAL NPNIAFADLN LQVVTEPLPL KADGQLTVGV NSFGFGGANA
HVILQSPELQ APVTQAASAR RVPLLLSAKS EEGLRATAER FAAYLAGQPQ ADYYDVAYQA
MFRRDAHSHR LLLVCDTAAE AAQALDDYAQ DPTLSELSAV LEAGQALDGA SAPVFVYSGN
GSQWQGMGRA MLDQPLFAAA VDEVDALFQP LAGYSLRAEL LGDNGEGRYA RTEIAQPALF
ALQVAVTKVL AAEGIHPVAV IGHSVGEVAA AWASGALSLE DATQVIYHRS RLQGLTRGTG
KMTAVGLSGE ATAQLIAELK LDGRLVVAGE NSARGATVAG EVDALALLEA ALEERQVFAR
RLDLDYAFHS PAMDPIKQAV IDDLAHIRPQ ATKIPFYSTV VGGQLNGERL DSQYWWQNIR
FPVLFQGALA ALVRNGLNLF VEVGPHAILR SYVSDVLVEC EQPGQVIGTL KRNDHSPLLL
ERTVARLQIA AVEPKWQARF PVTGRPLRLP NYAWQRDHFS LPVTAEAYGP LSHERVHPLL
GYPVTDQALT WENRLDTQQY PTLADHKVGE SVLFPGAGFT ELALAVAQLH QPGEFVDIEE
LEIHNPLLLS SEVSKKVRVQ VEEADGTLRI SSRTLMQRED WVQHVVARLP GEARGVLLDT
RAPALPARPA DFTGEQHLAM TCAVGLNYGP AYQTVAAAWV EGERVLAQLV VPAAIEHELA
SLHLHPALLD GAFQLITELL ASRQGHDDGL AFIPVKLGRI AFTNAGGVPV LAEVRQRKRT
AHSLLVDFTL FDASGAAVLA IKDARMRAVR LQYDRSGDIK RMGHVGQAAP GAVVPVQRNA
VACSPLAEAL QCLADEPAQV RYLNEVEPLL DVLCSSFVLD AVEQAGGRIS AEQVAQWSQG
QGDFLAMLLR HAEHDGSLQR SADGSWQLVD QGERPTSQVI WQELFRSYPE YFQIIHSVGR
IGRHLSALLD GSQAFDTLQP RETSGASLAR LVLGAAGQQH LLSGIGQTLA ARLAQLPPGQ
RLRVLEFGFG GASFAELLYA GLDFDRLDYA YCVAEPELEQ RLRDDCPALE VLGLEQLAEA
GTFDWVLVPT DFGPLGTVGD ALRLASGRLN PHGQLALLGQ YPARWADFVF GAQPDWWLAG
PQQALSRQQG PAFWSHELQR HGLTALRTLE ALPGNACGSY LLLADKPAGA DTAAPVAVQR
WAVLAEAGQG AALRLAQQLR AQGQQVDLLQ PGDAQALAAQ LGAFAQPPEH VLHLAGFDSG
TGLDGQAERC MQAAALVQAC ESLTIAPQCW LFSRGAAEHL YSVDTAAEVA AIGDAALWGF
GRTLANESPH CRIRLLDLAH AAAVELAVPA LLHADSETEL ALDAEGRRYV PRLRVLADQP
RRAVGDAQWV CLGFDLPGQL RNLRWEVREP RQPAADELDI QVRATGLNFR DVMFALGLLS
DEAIENGFSG PTLGFEFAGV VQGKGAEAVG DFAPGDRVVG FGPCSFANRL VTNANAVARI
PEGMSFEAAA TIPSTFFTVY YALHHLARLE PGEKVLIHGA AGGVGIAAIQ IAKWLGAEIH
ATAGSDEKRD FLRLLGVSHI YDSRSLAYAD QVLAATGGRG VDVVLNSLAG EAINRNLQVL
KPFGRFLELG KRDFYQNTRI GLRPFRNNIS YFGIDADQLM SERPAFTRRL FAEMMELFEQ
GILHPLPFRE FDANQVVEAY RYMQQARQIG KVVVTYANPI QQTVDTRVQP VRALQLAADA
SYLVTGGLGG FGLRTAQWLI DKGARHLVLL GRRGPASEEA QPQLALWHAQ GIDVQAVACD
ITDREQLRGV FDRIAASPWP LRGLVHAATV IDDSLIRNLD GDQLRRVLEP KAKGAQYLHE
LTQGLALDFF VMFSSATTLF GNPGQANYVA ANHWLEALAR HRRAQGQAAT AVLWGAIDDV
GFLARNSQIK DALQSRMGGS ALRAEAALAQ LEAMLLQGDN GHGVLELDFK ALARFLPSAT
TPRFSELARA YGGDHEDEGG GEDIQRMLEE LDDGELLERF VDMLKHEVCE ILRLPPARLD
AQRPLQEMGL DSLMSVELVV ALEERFGIRL PVMELSDSSS IDKLAVRLLE LLRGEASSGE
EQLAQNVLAR HGSEHSAEEL AQLNAALADS NAAPNRLID