Gene Pput_3898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3898 
Symbol 
ID5191850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4378908 
End bp4379243 
Gene Length336 bp 
Protein Length111 aa 
Translation table11 
GC content61% 
IMG OID640588371 
Producthelix-hairpin-helix repeat-containing competence protein ComEA 
Protein accessionYP_001269206 
Protein GI148549104 
COG category[L] Replication, recombination and repair 
COG ID[COG1555] DNA uptake protein and related DNA-binding proteins 
TIGRFAM ID[TIGR00426] competence protein ComEA helix-hairpin-helix repeat region 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.209502 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAATA ACGTTCTGTC GTACCTGCTG CTGCCGCTGT TCACCAGTTT GTCGTTCTCC 
CTTAGCGCCG CCCCGGCCAG CACCATGGCA GTGACCGAAC CGGTGCCGGT GGTGGCCGGG
GCCCAGGCAC AGCAGGCGCC GAGGCTGGAC TTGAACACGG CAGATGCACT CACCCTGCAA
AAGGAGCTGA ACGGCATTGG CAAGGCCAAG GCGGAGGCTA TTGTGGCCTA CCGCGAGGCC
AATGGGCCGT TTGCTTCAGT GGATGAGTTG CTGGAAATAA AGGGCATAGG CAATGCGTTG
CTGGAGCGCA ACCGGGACAA GGTGATGGTG GAGTAA
 
Protein sequence
MRNNVLSYLL LPLFTSLSFS LSAAPASTMA VTEPVPVVAG AQAQQAPRLD LNTADALTLQ 
KELNGIGKAK AEAIVAYREA NGPFASVDEL LEIKGIGNAL LERNRDKVMV E