| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3894 |
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| Symbol | |
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| ID | 5194535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4375452 |
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| End bp | 4376213 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640588367 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_001269202 |
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| Protein GI | 148549100 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.933722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0806905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATGA CCTTTTCTGG CCAGGTAGCC CTGGTGACCG GCGCGGGTGC CGGCATCGGC
CGGGCAACCG CCCTGGCGTT CGCCCACGAG GGCATGAAAG TGGTAGTGGC CGACCTCGAC
CCGGTCGGCG GCGAGGCCAC CGTGGCGCAG ATCCACGCGG CAGGCGGCGA AGCGCTGTTC
ATTGCCTGCG ACGTGACCCG CGACGCCGAG GTGCGCCAGT TGCATGTGCG CCTGATGGCC
GCCTACGGCC GGCTGGACTA CGCCTTCAAC AACGCCGGGA TCGAGATCGA GCAACACCGC
CTGGCCGAAG GCAGCGAAGC GGAGTTCGAT GCCATCATGG GCGTGAACGT GAAGGGCGTG
TGGTTGTGCA TGAAGTATCA GTTGCCCTTG TTGCTGGCCC AAGGCGGTGG GGCCATCATC
AATACCGCGT CGGTGGCGGG GCTTGGGGCG GCGCCAAAGA TGAGCATCTA CAGCGCCAGC
AAGCATGCGG TCATCGGCCT GACCAAGTCG GCGGCCATCG AGTACGCCAA GAAGGGCATC
CGCGTGAACG CCGTGTGCCC GGCTGTGATC GACACCGACA TGTTCCGCCG CGCTTACCAG
GCCGACCCGC GCAAGGCCGA GTTCGCCGCA GCCATGCACC CGGTGGGGCG CATTGGCAAG
GTCGAGGAAA TCGCCAGCGC TGTACTGTAC CTGTGCAGTG ACGGCGCAGC GTTTACCACC
GGGCATTGCC TGACGGTGGA TGGTGGGGCT ACGGCGATCT GA
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| Protein sequence | MSMTFSGQVA LVTGAGAGIG RATALAFAHE GMKVVVADLD PVGGEATVAQ IHAAGGEALF
IACDVTRDAE VRQLHVRLMA AYGRLDYAFN NAGIEIEQHR LAEGSEAEFD AIMGVNVKGV
WLCMKYQLPL LLAQGGGAII NTASVAGLGA APKMSIYSAS KHAVIGLTKS AAIEYAKKGI
RVNAVCPAVI DTDMFRRAYQ ADPRKAEFAA AMHPVGRIGK VEEIASAVLY LCSDGAAFTT
GHCLTVDGGA TAI
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