| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3847 |
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| Symbol | |
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| ID | 5190760 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4327315 |
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| End bp | 4328994 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588319 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001269155 |
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| Protein GI | 148549053 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.460611 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.310213 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGG AAACCGGCGG CTTCGCCGCT CTCGATCTTA ACCCGAACAT TGTTGCTGCC
GTTGTGGCTA CCGGCTACGA AGAGCCGTCC GCCATTCAGC AACAATCGAT CCCGATCATC
CTCGCCGGTC ACGACATGAT CGGCCAGGCG CAGACTGGCA CCGGCAAAAC CGCTGCCTTC
GCCCTGCCGA TCCTGAACAA GATCGATGTG AGCAAGCGCG AACCGCAAGC CCTGATCCTG
GCGCCAACCC GTGAGTTGGC GCTGCAAGTT GCTACCGCTT TCGAAACCTA CGCCAAGCAG
ATGCCGGGCG TGAACGTTGT CGCCGTCTAC GGTGGTGCCC CGATGGGCCC ACAGCTGCGT
GCGATCCGCA ACGGCGCGCA AATCGTCGTG GCCACCCCGG GCCGTCTGTG CGACCACCTG
CGTCGTGACG AAAAAGTCTT GTCGACCGTA CAGTACCTGG TACTGGACGA AGCCGACGAG
ATGCTGAAGC TGGGCTTCAT GGACGACCTC GAAGTGATCT TCGACGCAAT CCCGGCTACC
CGTCAGACCG TACTGTTCTC CGCTACCCTG CCGTCGTCGA TCCGTTCGAT CGCCGAGCGT
CACCTGCGTG AACCCAAGCA CGTCAAGATC CAGACCAAGA CCCAGACCGT TACCGCGATC
GAGCAGGCCC ACCTGATGGT CCACGCGGAC CAGAAGATCC CGGCTGTGCT GCGTCTGCTG
GAAGTGGAAG AGTTCGACGC GCTGATCGCC TTCGTGCGTA CCAAGCAAGC CACCCTGGAC
CTGGCCGCCG CGCTGGAAGC CAAAGGCTAC AAGGCTGCTG CACTGAACGG CGATATCGCC
CAGAACCAGC GTGAGCGCGT GATCGACTCG CTCAAGGATG GCCGCCTGGA CATCGTCGTC
GCCACCGACG TCGCTGCCCG TGGCCTGGAC GTACCGCGCA TCACTCACGT GTTCAACGTT
GACATGCCGT ACGACCCGGA ATCCTACGTA CACCGTATCG GCCGTACTGG CCGTGCCGGT
CGCGATGGCC GTGCACTGTT GCTGGTTACC CCGCGTGAGC GCCGCATGCT GCAGGTGATC
GAGCGTGTTA CCGGGCAGAA GGTTGCCGAA GCGCGCCTGC CGAATGCCCA GGCCGTGCTG
GATGCCCGCA TCAAGAAGCT GACCTCGAGC CTGGCGCCGC TGGTAGCCGA AGCAGAAGCC
ACCCACGGCG AGCTGTTCGA CCGCCTGACC ACAGACCTCG GTTGCAGCGC GCGTGCTCTG
GCTTCGGCCC TGCTGCGCAA GGCCACCAAT GGCCAGGCGC TGGACCTGGC GGCGGTAGAG
CGCGAGCAGC CACTGGTGCC GAGCTTCGCC CCGCGTGGTG AGCGTACCGA GCGCGGTGAG
CGTGGCGAGC GTCCTGACCG TGGTGATCGT GAGCGCCGTG CACCGCTGCC GTTGGCCGAA
GGCCGCGTGC GTTGCCGTAC CGCCCTGGGT GCCCGTGATG GCATCGCTGC CAAGAACCTG
CTGGGGGCGA TCCTCAACGA AGGTGGCCTG GCGCGTGACG CTATCGGCCG CATCCAGGTG
CGCGACAGCT TCAGCCTGGT CGAGCTGCCG GAAGACGGCC TCGAGAAGCT GCTGTCCAAG
CTCAAGGACA CCCGCGTGGC TGGCAAGCAG CTGAAGCTGC GTCGCTACCG CGAGGATTGA
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| Protein sequence | MTQETGGFAA LDLNPNIVAA VVATGYEEPS AIQQQSIPII LAGHDMIGQA QTGTGKTAAF
ALPILNKIDV SKREPQALIL APTRELALQV ATAFETYAKQ MPGVNVVAVY GGAPMGPQLR
AIRNGAQIVV ATPGRLCDHL RRDEKVLSTV QYLVLDEADE MLKLGFMDDL EVIFDAIPAT
RQTVLFSATL PSSIRSIAER HLREPKHVKI QTKTQTVTAI EQAHLMVHAD QKIPAVLRLL
EVEEFDALIA FVRTKQATLD LAAALEAKGY KAAALNGDIA QNQRERVIDS LKDGRLDIVV
ATDVAARGLD VPRITHVFNV DMPYDPESYV HRIGRTGRAG RDGRALLLVT PRERRMLQVI
ERVTGQKVAE ARLPNAQAVL DARIKKLTSS LAPLVAEAEA THGELFDRLT TDLGCSARAL
ASALLRKATN GQALDLAAVE REQPLVPSFA PRGERTERGE RGERPDRGDR ERRAPLPLAE
GRVRCRTALG ARDGIAAKNL LGAILNEGGL ARDAIGRIQV RDSFSLVELP EDGLEKLLSK
LKDTRVAGKQ LKLRRYRED
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