Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3844 |
Symbol | |
ID | 5191848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4324590 |
End bp | 4325477 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640588316 |
Product | heat shock protein HtpX |
Protein accession | YP_001269152 |
Protein GI | 148549050 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0501] Zn-dependent protease with chaperone function |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.00537908 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.388849 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCGCA TTCTGTTGTT TGTAGCCACC AACCTCGCGG TGGTGCTGGT TGCAAGCATT ACCCTGAGCC TGTTCGGTTT CAACGGGTTC ATGGCCGCCA ACGGGGTCGA CCTGAACCTC AGCAGCCTGC TGGTGTTCTG CGCCGTGTTC GGCTTTGCCG GCTCCCTCGT CTCGCTGTTC ATCTCCAAGT GGATGGCGAA GATGACCACC GGCACCCAGA TCATCAGCCA GCCGCGCACC CGCCACGAGC AGTGGCTGCT GCAAACGGTC GAAGAGCTGT CCCGCGAAGC GGGCATCAAA ATGCCTGAAG TGGGTATCTT CCCGGCTTAC GAGGCCAACG CCTTCGCCAC CGGCTGGAAC CGCAACGACG CGCTGGTCGC AGTGTCCCAG GGCCTGCTGG AGCGCTTCTC GCCCGATGAA GTGCGTGCGG TACTGGCCCA CGAAATTGGC CACGTTGCCA ACGGCGACAT GGTCACCCTG GCGCTGGTGC AGGGCGTGGT GAACACCTTC GTGATGTTCT TTGCCCGCAT CATCGGCAAC TTTGTCGACA AGGTAATCTT CAAGAACGAA GAGGGCCAAG GCATTGCCTA CTATGTAGCA ACCATCGTTG CCGAGCTGAT CCTTGGCATC CTGGCCAGCA TGATCGTGAT GTGGTTCTCG CGCCGCCGCG AATTCCGCGC AGACGAAGCC GGTGCGCAAC TGGCCGGTAC TGCGGCAATG ATCGGCGCCC TGCAGCGCCT GCGCGTGGAA CAAGGCCTGC CAGTGCACAT GCCTGACACC ATGAAGGCTT TCGGCATCAA TGGCGGCCTC AAGCACGGCC TGGCAGGGTT GCTGATGAGC CACCCGCCGC TGGAAGAACG CATTGAGGCC CTGCGCCGCC GCGGCTGA
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Protein sequence | MMRILLFVAT NLAVVLVASI TLSLFGFNGF MAANGVDLNL SSLLVFCAVF GFAGSLVSLF ISKWMAKMTT GTQIISQPRT RHEQWLLQTV EELSREAGIK MPEVGIFPAY EANAFATGWN RNDALVAVSQ GLLERFSPDE VRAVLAHEIG HVANGDMVTL ALVQGVVNTF VMFFARIIGN FVDKVIFKNE EGQGIAYYVA TIVAELILGI LASMIVMWFS RRREFRADEA GAQLAGTAAM IGALQRLRVE QGLPVHMPDT MKAFGINGGL KHGLAGLLMS HPPLEERIEA LRRRG
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