| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3809 |
|---|
| Symbol | |
|---|
| ID | 5190266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 4270489 |
|---|
| End bp | 4273761 |
|---|
| Gene Length | 3273 bp |
|---|
| Protein Length | 1090 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640588276 |
|---|
| Product | ribonuclease |
|---|
| Protein accession | YP_001269117 |
|---|
| Protein GI | 148549015 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1530] Ribonucleases G and E |
|---|
| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000518974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA TGCTGATTAA CGCGACTCAA CCCGAAGAGT TGCGTGTAGC CCTGGTGGAC
GGCCAACGTC TCTACGACCT GGACATCGAG TCCGGCGCGC GCGAGCAGAA AAAGGCCAAC
ATCTACAAAG GCAAGATCAC CCGCATCGAA CCCAGCCTCG AAGCCGCCTT CGTCGACTTC
GGTTCCGAAC GTCACGGCTT CCTGCCGCTG AAAGAAATCT CCCGCGAGTA CTTCAAGAAG
GCCCCAGAAG GCCGGGTCAA CATCAAGGAA GTGCTCAGCG AAGGCCAGGA AGTCATCGTT
CAGGTCGAGA AGGAAGAGCG CGGCAACAAA GGCGCCGCCC TCACCACCTT CATCAGCCTG
GCCGGCCGCT ACCTGGTGCT GATGCCCAAC AACCCGCGTG CCGGTGGCAT CTCGCGCCGC
ATCGAAGGCG AAGAGCGCAA CGAACTGCGC GAAGCCCTGA ACGGCCTGAC CGTACCGGGT
GACATGGGCC TGATCGTGCG CACTGCCGGC CTTGGCCGCA GCAGCGAAGA AATGCAGTGG
GACCTGGATT ACCTGCTGCA GCTGTGGACC GCCATCAAGG AAGCGTCCCT GGACCGCGCC
GCGCCATTCC TGATCTACCA GGAAAGCAAC GTCATCATCC GCGCCATCCG CGACTACCTG
CGCCAGGACA TCGGCGAAGT GCTGATCGAC AGCATCGACG CCCAGGAAGA AGCGCTGACC
TTCATCCGCC AGGTGATGCC GCAGTACGCC AGCAAGGTCA AGCTGTACGA AGACAGCGTG
CCGCTGTTCA ACCGCTTCCA GATCGAAAGC CAGATCGAGA CCGCCTTCCA GCGCGTGGTC
GACCTGCCAT CGGGTGGCTC GATCGTGATC GACCCGACCG AAGCCCTGGT GTCCATCGAC
ATCAACTCGG CGCGCGCCAC CAAAGGCAGC GACATCGAAG AAACCGCCCT GCAGACCAAC
CTGGAAGCGG CCGAGGAAAT CGCCCGCCAG CTGCGCCTGC GTGACATCGG CGGCCTGATC
GTCATCGACT TCATCGACAT GACCCCGGCG AAGAACCAGC GCGCTGTTGA AGAGCGCGTG
CGTGAATGCC TGGAAGCCGA CCGTGCCCGC GTGCAGGTTG GCCGCATCTC GCGCTTCGGC
CTGCTGGAAA TGTCCCGTCA GCGCCTGCGC CCATCGCTGG GCGAAAGCAG CGGCATCGTC
TGCCCACGCT GCTCCGGCAC CGGCATCATC CGTGACGTCG AATCGCTGTC GCTGGCCATC
CTGCGCCTGA TCGAAGAAGA AGCCCTGAAA GACCGCACCG CCGAAGTACG TGCTCAAGTG
CCGATCCCGG TAGCCGCTTT CCTGCTGAAC GAAAAGCGTA ACTCGATCAC CAAGATCGAG
CTGCGCACCC GTGCGCGCAT CATCATCCTG CCGAACGACC ACCTGGAAAC CCCGCACTTC
GAAGTCCAGC GCCTGCGCGA CGACAACCCT GAAGTGCTGA ACAACCAGTC CAGCTACGAA
ATCGCCGCCG CCGAAGCTGA AGAAGCGCCG CAGCCGACCG CCACCCGCAC CCTGGTACGC
CAGGAAGCCG CAGTGAAGAC GGCCCCGGCC CGCGCCAACG CACCGGTACC GGCCGCCGCT
GAAGAGCCCC AGGCTGCCGC GCCGGTCGCC CCTGCCCCGA GCGCTCCGGA GCCAAGCCTG
TTCAAAGGCC TGGTGAAGTC GCTGGTGAGC CTGTTCGCCG GCAAGGACGA GCCTGCCGCC
GCGCCAGTGG CTCCCGCCGC CGAAAAACCG GCTGCCGAGC GCAGCCCGCG TAACGAAGAA
CGCCGCAACG GCCGCCAGCA AAGCCGCAAC CGCAACGGCC GCCGCGACGA AGAACGCAAA
CCGCGTGAAG AGCGTGCCGA GCGCGCACCG CGCGAGGAAC GCGCCCCACG CGAAGAACGT
GCACCGCGTG AGGAACGTGC ACCGCGTGAA GAACGTGCAC CGCGTGAGGA ACGTGCCCCA
CGTGAAGAGC GTGCACCACG TGAAGAGCGT GCACCGCGTG AAGAACGTAC TCCGCGCCAG
CCACGCGAAG ACCGCCGTAG CAACCGCGGC GAAGAGCGCG TTCGCGAGCT GCGCGAACCG
CTGGACGCCA CCCCGCCAGC CGAACGCGAA GAGCGCCAGC CGCGTGAAGA ACGTGTAGCC
CGCGAAGAGC GTGCTCCACG CGAAGAACGC GCACCGCGTG AAGAACGCGC ACCGCGTGAA
GAACGTGCTC CACGTGAAGA ACGTGCTCCA CGTGAAGAAC GCGCACCGCG TGAAGAACGT
GCTCCACGTG AAGAGCGCGC ACCTCGGGAA GAACGCGCTC CACGCGAAGA ACGCGCCCCG
CGCCCACCAC GCGAAGAGCG CCAACCACGC GCTGCCGAAG AAGCAACCGA GCAGGCTGCC
GAACTGGCCG AAGAGCAACT GCCAGGCGAA GAGCTGCTGC AAGACGAGCA GGAAGGCACC
GATGGCGAGC GCCCACGCCG CCGCTCCCGT GGCCAGCGTC GTCGCAGCAA CCGTCGTGAG
CGTCAGCGCA ATGCCAATGG CGAGCTGATC GACGGCAGTG AAGAAGAAGG CAGCGAAGAG
CAGCCACAAC AGCACCAGGC CACCGAGCTG GGTGCCGAAC TGGCTGCCGG CCTTGCCGTG
ACAGCTGCTG TCGCCAGCAG CAACATCAGC TCCGATGCAG AAGCCCAGGC CAACCAGCAG
GCCGAGCGTG CCACCGCCGA AGTCGCTGCC GTTGCAGAAA CCGACAACAG CGAAGCCGCC
CAGCCGGTCG AGCAGGCCGA AGTGGTCACC AAAGCTGAAG AAGCGTCCGT GGCCCCAGCG
GTCGAGCAGC CGGTCACCGA GCCAGTGGCC GCAGCCGAGG CAACTGCCGA GCCTGTGGTC
GAAATGGCCC CGCAGCCTGT CGCTGAAGAT GCACCTGCTG CTGAGCCGGC CGTTGTTGCA
GAAACCGTGG TCACTGAAAC CCCAGCAGAA GCCCCAGCGG TAGAAGCCGG TGAGATCGAA
CAGGCCCCGG CCGTGGTCGA AGTCGCTCCG GTTGCCGCAC AGCCTGCCCC GGTTGTCGAA
GCCCAGCCAG AAGTGGTGGC CGAGCCTGCA CCTGCAGTGG TCGAACCTGC CACTGTCATG
CTGGCCAACG GCCGCGCACC GAACGACCCA CGTGAAGTGC GTCGCCGCAA GCGTGAGGCC
GAGGCTGCTG CCAAAGCGGC ACAGGAAGCT GCTGCAGCCT CCCAGGAACC AGCCTTGGAA
ACCGCCGATG AGCACAAACC TCATCACGGC TGA
|
|---|
| Protein sequence | MKRMLINATQ PEELRVALVD GQRLYDLDIE SGAREQKKAN IYKGKITRIE PSLEAAFVDF
GSERHGFLPL KEISREYFKK APEGRVNIKE VLSEGQEVIV QVEKEERGNK GAALTTFISL
AGRYLVLMPN NPRAGGISRR IEGEERNELR EALNGLTVPG DMGLIVRTAG LGRSSEEMQW
DLDYLLQLWT AIKEASLDRA APFLIYQESN VIIRAIRDYL RQDIGEVLID SIDAQEEALT
FIRQVMPQYA SKVKLYEDSV PLFNRFQIES QIETAFQRVV DLPSGGSIVI DPTEALVSID
INSARATKGS DIEETALQTN LEAAEEIARQ LRLRDIGGLI VIDFIDMTPA KNQRAVEERV
RECLEADRAR VQVGRISRFG LLEMSRQRLR PSLGESSGIV CPRCSGTGII RDVESLSLAI
LRLIEEEALK DRTAEVRAQV PIPVAAFLLN EKRNSITKIE LRTRARIIIL PNDHLETPHF
EVQRLRDDNP EVLNNQSSYE IAAAEAEEAP QPTATRTLVR QEAAVKTAPA RANAPVPAAA
EEPQAAAPVA PAPSAPEPSL FKGLVKSLVS LFAGKDEPAA APVAPAAEKP AAERSPRNEE
RRNGRQQSRN RNGRRDEERK PREERAERAP REERAPREER APREERAPRE ERAPREERAP
REERAPREER APREERTPRQ PREDRRSNRG EERVRELREP LDATPPAERE ERQPREERVA
REERAPREER APREERAPRE ERAPREERAP REERAPREER APREERAPRE ERAPREERAP
RPPREERQPR AAEEATEQAA ELAEEQLPGE ELLQDEQEGT DGERPRRRSR GQRRRSNRRE
RQRNANGELI DGSEEEGSEE QPQQHQATEL GAELAAGLAV TAAVASSNIS SDAEAQANQQ
AERATAEVAA VAETDNSEAA QPVEQAEVVT KAEEASVAPA VEQPVTEPVA AAEATAEPVV
EMAPQPVAED APAAEPAVVA ETVVTETPAE APAVEAGEIE QAPAVVEVAP VAAQPAPVVE
AQPEVVAEPA PAVVEPATVM LANGRAPNDP REVRRRKREA EAAAKAAQEA AAASQEPALE
TADEHKPHHG
|
|---|
| |