Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3806 |
Symbol | |
ID | 5194593 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4267061 |
End bp | 4268050 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640588273 |
Product | signal peptide peptidase SppA, 36K type |
Protein accession | YP_001269114 |
Protein GI | 148549012 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.435624 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGACG AATGGAAAGC CCCTGAGGCC GAGCCCGGGG AGCGCGAAGA GCGCAGCAGC TGGAAGCTGC TGGAAAAGAC CTTGCTGGCC AGCGTGCAGG AGCAGCGACG GTCGCGGCGC TGGGGGATCT TCTTCAAGCT GCTGACCTTC GTCTACCTGT TCGGCATTCT GGCGTTGTTC TCGCCGCTGA TGGACATGGA CAAGGCCGCT TCGCGCAGTG CCAGCCATAC CGCGTTGGTC GAGGTGCGGG GGGTGATTGC CGATCAGGAG GCTGCCAGCG CCGATAATAT CGTCAAGAGC CTGCGAGAGG CGTTCAAGGA CGACAAGACC AAGGCTGTGG TGATGCGCAT CAACAGCCCG GGTGGCAGCC CGGTGCAGGC GGGTTACGTG TATGACGAAA TCCGGCGCCT GCGTGCCGAA TATCCCGCCA TCAAGCTGTA TGCGGTGATC GCTGATCTTG GGGCTTCCGG TGCCTATTAT ATCGCCAGTG CGGCGGACGA GATCTATGCC GACAAGGCCA GCCTGGTGGG TTCCATTGGG GTGACGGCGG CGGGTTATGG CTTTGTTGGT GCCATGGAGA AGCTTGGGGT CGAGCGGCGT GCCTATACAT CGGGTGAGCA CAAGGCGTTC CTTGATCCGT TTTCGCCGGA AAAACCAGAA GAGACCCGGT TCTGGCAGGG CGTGCTGGAT ACCACGCACC AGCAGTTCAT CGCCATGGTC AAGCAGGGGC GCGGTGAGCG CCTGAAGGAC AAGGAGCACC CGGAGTTGTT CAGTGGCCTT ATCTGGTCGG GTGAGCAGGC CAAGGCGCTG GGGCTGGTGG ATGGCTTGGG CAGTGCCAGC TATGTGGCGC GCGAGATCGT GGGGGAGAAG GAGTTGGTGG ACTTCACCGT TCAGGAGTCG CCTTTCGATC GCTTCTCCAA GCGCGTGGGT GCCAGCGTGG CTGAGCACCT GGCGATGTGG ATGGGGTTCC AGGGGCCGCA GTTGCGTTGA
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Protein sequence | MADEWKAPEA EPGEREERSS WKLLEKTLLA SVQEQRRSRR WGIFFKLLTF VYLFGILALF SPLMDMDKAA SRSASHTALV EVRGVIADQE AASADNIVKS LREAFKDDKT KAVVMRINSP GGSPVQAGYV YDEIRRLRAE YPAIKLYAVI ADLGASGAYY IASAADEIYA DKASLVGSIG VTAAGYGFVG AMEKLGVERR AYTSGEHKAF LDPFSPEKPE ETRFWQGVLD TTHQQFIAMV KQGRGERLKD KEHPELFSGL IWSGEQAKAL GLVDGLGSAS YVAREIVGEK ELVDFTVQES PFDRFSKRVG ASVAEHLAMW MGFQGPQLR
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