Gene Pput_3806 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3806 
Symbol 
ID5194593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4267061 
End bp4268050 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content62% 
IMG OID640588273 
Productsignal peptide peptidase SppA, 36K type 
Protein accessionYP_001269114 
Protein GI148549012 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0616] Periplasmic serine proteases (ClpP class) 
TIGRFAM ID[TIGR00706] signal peptide peptidase SppA, 36K type 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.435624 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGACG AATGGAAAGC CCCTGAGGCC GAGCCCGGGG AGCGCGAAGA GCGCAGCAGC 
TGGAAGCTGC TGGAAAAGAC CTTGCTGGCC AGCGTGCAGG AGCAGCGACG GTCGCGGCGC
TGGGGGATCT TCTTCAAGCT GCTGACCTTC GTCTACCTGT TCGGCATTCT GGCGTTGTTC
TCGCCGCTGA TGGACATGGA CAAGGCCGCT TCGCGCAGTG CCAGCCATAC CGCGTTGGTC
GAGGTGCGGG GGGTGATTGC CGATCAGGAG GCTGCCAGCG CCGATAATAT CGTCAAGAGC
CTGCGAGAGG CGTTCAAGGA CGACAAGACC AAGGCTGTGG TGATGCGCAT CAACAGCCCG
GGTGGCAGCC CGGTGCAGGC GGGTTACGTG TATGACGAAA TCCGGCGCCT GCGTGCCGAA
TATCCCGCCA TCAAGCTGTA TGCGGTGATC GCTGATCTTG GGGCTTCCGG TGCCTATTAT
ATCGCCAGTG CGGCGGACGA GATCTATGCC GACAAGGCCA GCCTGGTGGG TTCCATTGGG
GTGACGGCGG CGGGTTATGG CTTTGTTGGT GCCATGGAGA AGCTTGGGGT CGAGCGGCGT
GCCTATACAT CGGGTGAGCA CAAGGCGTTC CTTGATCCGT TTTCGCCGGA AAAACCAGAA
GAGACCCGGT TCTGGCAGGG CGTGCTGGAT ACCACGCACC AGCAGTTCAT CGCCATGGTC
AAGCAGGGGC GCGGTGAGCG CCTGAAGGAC AAGGAGCACC CGGAGTTGTT CAGTGGCCTT
ATCTGGTCGG GTGAGCAGGC CAAGGCGCTG GGGCTGGTGG ATGGCTTGGG CAGTGCCAGC
TATGTGGCGC GCGAGATCGT GGGGGAGAAG GAGTTGGTGG ACTTCACCGT TCAGGAGTCG
CCTTTCGATC GCTTCTCCAA GCGCGTGGGT GCCAGCGTGG CTGAGCACCT GGCGATGTGG
ATGGGGTTCC AGGGGCCGCA GTTGCGTTGA
 
Protein sequence
MADEWKAPEA EPGEREERSS WKLLEKTLLA SVQEQRRSRR WGIFFKLLTF VYLFGILALF 
SPLMDMDKAA SRSASHTALV EVRGVIADQE AASADNIVKS LREAFKDDKT KAVVMRINSP
GGSPVQAGYV YDEIRRLRAE YPAIKLYAVI ADLGASGAYY IASAADEIYA DKASLVGSIG
VTAAGYGFVG AMEKLGVERR AYTSGEHKAF LDPFSPEKPE ETRFWQGVLD TTHQQFIAMV
KQGRGERLKD KEHPELFSGL IWSGEQAKAL GLVDGLGSAS YVAREIVGEK ELVDFTVQES
PFDRFSKRVG ASVAEHLAMW MGFQGPQLR