Gene Pput_3785 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3785 
Symbol 
ID5195394 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4246077 
End bp4247627 
Gene Length1551 bp 
Protein Length516 aa 
Translation table11 
GC content61% 
IMG OID640588251 
ProductEmrB/QacA family drug resistance transporter 
Protein accessionYP_001269093 
Protein GI148548991 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0929459 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.428314 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCGGTG ACCAACTGCT GCGCCCCACG GCGGAGCCAA CCCGACGCGA CTGGATCGCG 
GTGATGAGCG TGATGCTCGG TGCCTTCATG GCAGTGCTGG ATATCCAGAT CACCAATTCC
TCGTTGAAGG ACATCCAGGG CGCTCTGTCG GCGACCCTGG AAGAAGGCTC ATGGATTTCA
ACCTCCTACC TGGTGGCGGA AATCATCATG ATCCCGCTGA CGGCCTGGCT GGTGCAGCTG
TTGTCGGCGC GGCGCCTGGC GGTATGGGTA TCCGGCGGTT TCCTGCTGTC GTCGCTGCTG
TGCTCGATGG CCTGGAACCT GGAGAGCATG ATCCTGTTCC GCGCCTTGCA GGGTTTCACC
GGTGGCGCGC TGATCCCGCT GGCCTTCACC CTGACGCTGA TCAAGCTGCC CGAGCACCAC
CGTGCCAAAG GCATGGCGAT GTTCGCCATG ACCGCCACTT TTGCCCCCTC CATCGGCCCC
ACCCTGGGCG GCTGGCTGAC CGAAAACTGG GGCTGGGAAT ACATCTTCTA CATCAATATC
CCACCAGGCC TGCTAATGAT CGCCGGCTTG TTGTATGGGC TTGAGAAGAA GGAGGCGCAC
TGGGAGCTGC TGAAAAGTAC CGATTACGCC GGCATCGTCA CGCTCGGCCT TGGGTTGGGC
TGCCTGCAGG TGTTTCTCGA GGAAGGCCAT CGCAAGGACT GGCTGGAGTC ACACCTGATC
GTCGGCCTGG GCAGTGTTGC CCTGGTCAGC CTGATCACCT TCGTCATCCT GCAGTTTTCC
AAGCCTCACC CGCTAATCAA CCTGCGCATC CTCGGCAACC GCAACTTTGG CCTGTCGAGC
ATCGCCAGCC TGGGCATGGG CGTGGGCCTG TACGGCTCGA TCTATCTGCT ACCGCTGTAC
CTGGCGCAGG TACAGGGTTA CAACGCCTTG CAGATTGGCG AGGTGATCAT GTGGATGGGT
ATTCCGCAGT TGTTCCTGAT CCCGCTGGTG CCGCAACTGA TGAAGGTGAT ATCGCCCAAG
GTACTATGCG CGCTGGGTTT TTGCCTGTTC GGCGCTGCCA GTTTCGGTTC GGGGGTGCTC
AACCCGGACT TTGCCGGGCC GCAGTTCAAC CATATCCAGA TCATCCGCGC CCTGGGTCAA
CCGATGATCA TGGTGACCAT CTCTCTGATT GCCACCGCGT ATATCCAACA ACAGGATGCA
GGGTCCGCGT CGAGCCTGTT CAATATTCTG CGTAACCTCG GTGGCGCGAT TGGTATTGCC
TTGCTGGCCA CCCTGCTGGA TGCGCGCACC AAGGTGTACT TCGACTACCT GCGGGAGGCG
GTGGTGCCGA GCAACCCGCA GGTGGCTGAG CGGCTGGCGC AACTGGCGGA GCGCTTGGGC
AATGACAATG CGGCGCTGGG CAAACTTAGC GAGATTACCC ACCAGCAGGC ACTGATCATG
GCTTACAACG ATGCCTTCCA CTTTGTCGGG ATCGGGTTGG CGGTGAGCAT GGTGGCGGTG
TTGCTGACCC GCAAGTTGCC GGAGGGGCTG AAGGCTGGGG AAGCCCATTG A
 
Protein sequence
MAGDQLLRPT AEPTRRDWIA VMSVMLGAFM AVLDIQITNS SLKDIQGALS ATLEEGSWIS 
TSYLVAEIIM IPLTAWLVQL LSARRLAVWV SGGFLLSSLL CSMAWNLESM ILFRALQGFT
GGALIPLAFT LTLIKLPEHH RAKGMAMFAM TATFAPSIGP TLGGWLTENW GWEYIFYINI
PPGLLMIAGL LYGLEKKEAH WELLKSTDYA GIVTLGLGLG CLQVFLEEGH RKDWLESHLI
VGLGSVALVS LITFVILQFS KPHPLINLRI LGNRNFGLSS IASLGMGVGL YGSIYLLPLY
LAQVQGYNAL QIGEVIMWMG IPQLFLIPLV PQLMKVISPK VLCALGFCLF GAASFGSGVL
NPDFAGPQFN HIQIIRALGQ PMIMVTISLI ATAYIQQQDA GSASSLFNIL RNLGGAIGIA
LLATLLDART KVYFDYLREA VVPSNPQVAE RLAQLAERLG NDNAALGKLS EITHQQALIM
AYNDAFHFVG IGLAVSMVAV LLTRKLPEGL KAGEAH