Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3784 |
Symbol | |
ID | 5195225 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4244924 |
End bp | 4246087 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640588250 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001269092 |
Protein GI | 148548990 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.52274 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.687731 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAGCAG GAGGCGGGCA CCGGGCTCCA GCAATGGCGC GAACGTCACT TGTCGACAGG CCCGGTGCCG CTGTTAAATT TGTTTACATT TCTGGAACGA TAGTCCCCAT GCCTGCCCAA CTCAAACGCC GCCTGACGCT CTTCTTCGCC CTGGTGGCCA TCATCGCCCT CGCCTTCCTG GGCCACTGGT ACTTCAAGGG CCGCTTCTAC GAGAGCACCG ACAACGCTTA CGTGCAGGGT GAGATCACCC GTATCTCCAG CCAGCTTGGC GCACGTATCG AAACGGTACC GGTCGAGGAC AACCAGCACG TCAGCAAGGG CGACCTGCTG GTGCGCCTGG AAGCCGCCGA CTTTGAGCTG GCGGTCGAAC GCGCCCGTGC CGCGCTGGCC ACCCGCGAAG CCGAGTACGC ACAAGCGCAA AGCCGCCTCA CCCAACAAGG CAGCCTGATT GCCGCCGGCC AGGCCCAGTT GGCGGCCACC CAGGCCACGT TCGACCGTTC ACGGCTGGAC CTGAGCCGTG CCGAGAAGCT GCGCAAGCCG GGTTTTGTCT CTGAGGAGCG GGTCACTACC CTGTCGGCGG ACAGCCATGT CGCCGGTTCC CAGGTCGACA AGGCCCGCGC CGACCTGCAA AGCCAGCGCC AGCAGGTCAC CGCCCTGAAC GCCGAACTCA AGCGCCTCGA TGCGCAAATC GCCAATGCCC GCACCGACCT GGCCCAGGCC GAACTGAACC TGACCCGCTG CGAAATCCAT GCGCCGATCA GCGGCACCAT TGGCCAGCGT AATGCGCGCA ATGGCCAAGT GGTGCAGGCC GGCGCCTACC TGCTGTCGAT CGTGCCGGAT GAAGACATCT GGGTGCAGGC CAACTTCAAG GAAACCCAGA TCGGCCGCAT GCACCCCGGC CAGCGCGCGG AGCTGTTGTT CGACAGCTAC CCCGACACAC CGATCGAAGG CCGGGTGGAC AGCCTGTTCG CCGCGTCCGG TGCGCAGTTC AGCCTGCTGC CACCGGACAA CGCCACCGGC AATTTCACCA AAGTTGTGCA GCGCATCCCG ATAAAACTCA CGTTCAGCGC CGACAACCCG TTGCACGGGC GTATTCGCCC CGGCATGTCG GTGACCGCCA CCGTCGACCT GCGCAGCGCA GACGAAGGCC ACAATGGCCG GTGA
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Protein sequence | MLAGGGHRAP AMARTSLVDR PGAAVKFVYI SGTIVPMPAQ LKRRLTLFFA LVAIIALAFL GHWYFKGRFY ESTDNAYVQG EITRISSQLG ARIETVPVED NQHVSKGDLL VRLEAADFEL AVERARAALA TREAEYAQAQ SRLTQQGSLI AAGQAQLAAT QATFDRSRLD LSRAEKLRKP GFVSEERVTT LSADSHVAGS QVDKARADLQ SQRQQVTALN AELKRLDAQI ANARTDLAQA ELNLTRCEIH APISGTIGQR NARNGQVVQA GAYLLSIVPD EDIWVQANFK ETQIGRMHPG QRAELLFDSY PDTPIEGRVD SLFAASGAQF SLLPPDNATG NFTKVVQRIP IKLTFSADNP LHGRIRPGMS VTATVDLRSA DEGHNGR
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