Gene Pput_3755 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3755 
Symbol 
ID5191246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4207144 
End bp4209699 
Gene Length2556 bp 
Protein Length851 aa 
Translation table11 
GC content65% 
IMG OID640588211 
Productfimbrial biogenesis outer membrane usher protein 
Protein accessionYP_001269063 
Protein GI148548961 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3188] P pilus assembly protein, porin PapC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTCTGT CCATCGCCCC CCACCCCGTC GAGGGAGCCG ATGCAGGCGC GCACGCGTTC 
AGTGGCGGCA CGCTTCGTCC GGCCTGGAAG CTCAACGCCC TGTCATTGGT CATCTGCACC
GCGCTGCCCA GCCTTGCATC GGCGCAGGAC GCCGCCCACC TGCAGGGCTT CAACACCACC
TTTCTGCAGG GCGCGCAATC GGCGGTCGAC CTGCAAATGC TGCTGTCGGC CAACAGCGTG
CTGCCGGGCA ACTACCGGGT AGACCTGTAC AGCAACGAAG TGCTGGTAGG CCGGCGTGAC
ATCGAATTCA ACCGCCACCC ACAGACTGGG CGGGTGGAAC CCTGCCTGAC CCTGGAACTG
CTCGAGCAGC TGGGTATCGA CATGGACAAG CTCAAGGCAC AGGGGCGCCT GGATACCGCC
TCGGCCTGCC ACGACCTGGC CGCACTGATC GACCAGGCCA GCCTGAGCTA CGACTCGGGT
CACCTGCGCC TGTCCGCCAG CATCCCGCAG GTTGCCATGA AACGCGGCCT GCGCGGCTAC
GTCGACCCGC AACTGTGGGA CGCAGGGGTG TCTGCGGCGT TCGTGAACTA TCAGTTCAAC
ACCAGCCGCA GCGCCGGCGA TGCCGAGACC CGCATCGCCA ACAACCTGAG CCTGCGCAAC
GGCATCAACC TGGGCAGTTG GCGCTTGCGC AACGAGTCGA ACTTCAGCAG CGGCACCGGG
CAGCCGGACA CCTTCAAGAG CAACCGCAGC TATGTGCAGC ACGACGTGAC CGCGCTCAAA
GGCCAGTTCA GCGCCGGTGA CATTTTCAGC GACACCGACC TGTTCGACAG CGTGCGCTAC
CGCGGCCTGA AGCTGGCTTC GGACGAAGGC ATGCGCGCCG ACAGCGAGCG CGGCTACGCA
CCTGTGGTGC GTGGCGTGGC GCAGACCAGC GCCAGGGTCG AGATTCGCCA GAACAACTAC
GTGCTCTACA CCGCCAACGT ACCGCCCGGC CCGTTCGAGA TCAGCGACAT CTACCCCAGC
GGCTCCAATG GCGACCTGGA AGTCACCATC ATCGAGGCCG ACGGCCGTCG ACGGGTCACC
GTGCAGGCCT TCTCCAGCCT GCCGCTCATG GTCCGTGGCG GTCAGGTCAA GTACAGCCTG
TCCGCTGGAC GCTACAACAG CAACACGGAG GGCCTGGCCA CGCCGCAGAT GCTCAGTACG
ACGCTGGCTT ACGGCCTGAC CAACACCGTG ACGGGCGTCT TTGGCCTGCA AGCCACCCAA
GACTATAAGG CAATGGCCGT GGGCAGCGGC CTGAACACAC TGCTGGGCGC CTTTTCGCTC
GATGTCACCC ACTCCTCGAG CAAGGCCCAG GGCCAGACCA CCCAGGGCAA CAGCTTGCGG
GCGCTATACG CCAAGACATT CACCGGCACC GACACCAACT TTACCCTGGC CGCCTACCGC
TATTCCACCG AGGGCTTCCG TACCCTCACC CAGCATGTCG AGGACCTAAG CGCCAGCGCG
ATCAAGCGCA GTGGCAACTC CAAGACCCGC ACCGACCTGA CCATCAACCA GAGCCTGGGC
CGCAACCGCG CGTTCGGCAG CCTGTATCTG ACCGCCACCG ACCAGCGCTA CTGGAACCGC
GGCGGTTCGC AGAGCCTGAC CGCCGGATAC AGCAACAACT GGGGCGAGAT CTCCTACAAC
CTGGACGTCA GCCGCACCAA GGAGCTGGGG AACTCAGGCC CTTCGGGGCA AGATACCCAG
CTCAACCTGT CGGTATCGTT CCCACTCGGC AGCCGCGCCC GCGCACCGCG GGCGTTCGTC
ACCACCAGCA CACAGAAGGG CAACGACACC ACCCAGGCCG GCATCAACGG CTACCTGTCG
GAGACCAGCG ACACCTTCTA CTCGATCCAG GGCGGCCACA GCCGCACCAG CGGCAGCTCG
GCATCGGCCA ACCTGAACAC CCGCACTTCG GTGGCCGACA TCAGCCTGGG CTATAGCCAG
GGGCGCGGCT ACGACTCGCA GAACCTGAAC ATTGCCGGCG CCGTGGTTGC CCACCAGGGC
GGCATCAACC TCGGCCAGTC GCTCAGTGAG ACCTTCGCCC TGGCCGAAGT GCCGGGTGTG
AAGGGCGCAA AGATCAGCAG CTATAGCGGT GTGGAGACCG GGCGCAATGG CTATGCGGTG
ATCCCCAGCG CCCAGCCCTA TCGCGTCAAC TGGATCAGCC TGGACACCAG TGACCTGGGG
GGCGACATCG AAATCGACAA TGCCACCCAG CAGTTGGTGC CTCGCCGCGG TGCCGTGGTG
CTTGCCCGCT ATACCGGCAA GAGCGGGCGT CGGGTGCAGT TCGAGCTGTT CGACGAGCGC
GGTCAACTGA TACCGTTCGG GGCCTCGGTC GAGGACGCTG CGGGCCAGCA ACTGGCAATT
TCCGACCCGA GCGGCAAGGC ATTGTTACTC CTGGAACAGG ACCAGGGCAG CCTGACCATC
AAGTGGGGTG AGCGCCAGTG TTCGGCACCT TACAACCTTC CGGAACGGGA CAAGGCAGTT
AACTATGAAC GTCAGCGCCT GGCTTGCCGG CCGTGA
 
Protein sequence
MSLSIAPHPV EGADAGAHAF SGGTLRPAWK LNALSLVICT ALPSLASAQD AAHLQGFNTT 
FLQGAQSAVD LQMLLSANSV LPGNYRVDLY SNEVLVGRRD IEFNRHPQTG RVEPCLTLEL
LEQLGIDMDK LKAQGRLDTA SACHDLAALI DQASLSYDSG HLRLSASIPQ VAMKRGLRGY
VDPQLWDAGV SAAFVNYQFN TSRSAGDAET RIANNLSLRN GINLGSWRLR NESNFSSGTG
QPDTFKSNRS YVQHDVTALK GQFSAGDIFS DTDLFDSVRY RGLKLASDEG MRADSERGYA
PVVRGVAQTS ARVEIRQNNY VLYTANVPPG PFEISDIYPS GSNGDLEVTI IEADGRRRVT
VQAFSSLPLM VRGGQVKYSL SAGRYNSNTE GLATPQMLST TLAYGLTNTV TGVFGLQATQ
DYKAMAVGSG LNTLLGAFSL DVTHSSSKAQ GQTTQGNSLR ALYAKTFTGT DTNFTLAAYR
YSTEGFRTLT QHVEDLSASA IKRSGNSKTR TDLTINQSLG RNRAFGSLYL TATDQRYWNR
GGSQSLTAGY SNNWGEISYN LDVSRTKELG NSGPSGQDTQ LNLSVSFPLG SRARAPRAFV
TTSTQKGNDT TQAGINGYLS ETSDTFYSIQ GGHSRTSGSS ASANLNTRTS VADISLGYSQ
GRGYDSQNLN IAGAVVAHQG GINLGQSLSE TFALAEVPGV KGAKISSYSG VETGRNGYAV
IPSAQPYRVN WISLDTSDLG GDIEIDNATQ QLVPRRGAVV LARYTGKSGR RVQFELFDER
GQLIPFGASV EDAAGQQLAI SDPSGKALLL LEQDQGSLTI KWGERQCSAP YNLPERDKAV
NYERQRLACR P