| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3728 |
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| Symbol | |
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| ID | 5192620 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 4178370 |
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| End bp | 4179257 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640588184 |
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| Product | rhomboid family protein |
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| Protein accession | YP_001269036 |
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| Protein GI | 148548934 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATTA TCGAAGTGAT GCGCCTGCCG CTGTCGGTCG ACCTCAGCGG CTTCGTCCAC
CTGTTGCAAC GCCTGCAGGT ACCGCACCGG GTCAGCGAGG AGGGCGATGC CCAGGTCCTC
TGGGCCCCCG ACACCCTGGC CGAAGATGTG CTGCAGCTTT ACCAGCGCTA CCCCGACGGC
AACGCCGACC TGCCGGCCAG CGCCGAACCT GTAGGGGCGG GTTCACCCGC GAATGCCCCC
ACACAGCCTT CTCTGGCAGC CCAGGCCAAG GCCTGCAAAA TCACCACCCT CACACTGCTG
CTGTGCTTCA TCGTCGCCGG CCTTACGGGC CTTGGTGACA ACTTCACCAC CATCAGCTGG
TTCACCTTCC TCGACTTCCG TGTCCAGGGC GACTACCTGT ACTTCACCTC GCTGGCGCAA
ACCCTGGATG AAGGCCAGTG GTGGCGCCTG GTATCACCCA TGCTGCTGCA TTTCGGCGTG
CTGCACCTGG CCATGAACAG CCTGTGGTAC TGGGAGCTGG GCAAACGCAT CGAACTGCGC
CAGGGCCCGT GGGCGTTGCT GGGCCTGACC CTGCTGTTCA GCCTGGTGTC CAACCTGGCC
CAGCACTACA CCAGTGGGCC GAGCTTGTTT GGTGGTCTGT CCGGCGTGCT GTACGGCCTG
CTCGGGCATA TCTGGCTGTA CCAGTGGCTG GCGCCTGACC GTTACTTCAA CCTGCCCAAG
GGCGTGCTGG TGATGATGCT GATCTGGCTG GTGGTATGCC TGACCGGCGT GGTCGGCACG
CTCGGCCTTG GCCAGATCGC CAATGCCGCC CACGTCGGCG GGCTGCTCAT CGGATGCCTG
ACCGGGCTCT TGGGTGGGGC GCTGGCCCGG CGTAAACTGT CGGCTTGA
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| Protein sequence | MNIIEVMRLP LSVDLSGFVH LLQRLQVPHR VSEEGDAQVL WAPDTLAEDV LQLYQRYPDG
NADLPASAEP VGAGSPANAP TQPSLAAQAK ACKITTLTLL LCFIVAGLTG LGDNFTTISW
FTFLDFRVQG DYLYFTSLAQ TLDEGQWWRL VSPMLLHFGV LHLAMNSLWY WELGKRIELR
QGPWALLGLT LLFSLVSNLA QHYTSGPSLF GGLSGVLYGL LGHIWLYQWL APDRYFNLPK
GVLVMMLIWL VVCLTGVVGT LGLGQIANAA HVGGLLIGCL TGLLGGALAR RKLSA
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