Gene Pput_3622 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3622 
Symbol 
ID5190841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp4045241 
End bp4047004 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content64% 
IMG OID640588078 
Productlipid ABC transporter ATPase/inner membrane protein 
Protein accessionYP_001268930 
Protein GI148548828 
COG category[V] Defense mechanisms 
COG ID[COG1132] ABC-type multidrug transport system, ATPase and permease components 
TIGRFAM ID[TIGR02204] ABC transporter, permease/ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.368262 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAAT CGGTTTCTCC GCGCCAACGC CGCGCCTTGC GCCTGGCTTG GCAGTTCGTT 
CGCCCTTATC GCCGCCAGGT GCTGCTGGCA TTGCTGGCGC TGGTGGTCAC CGCTGCCATT
ACCCTGTCGA TGGGCCAAGG CATCCGCCTG CTGGTGGATC AAGGCTTCAT GACCCGCTCC
GCGCATCAGC TCAATCAGAC CATCGGGCTG TTCCTGCTGC TGGTGCTGGC GCTGGCGGTG
GGTACCTTCA GCCGTTTCTA TCTGGTGTCG TGGATTGGCG AGCGTTGTGT GGCCGATATC
CGTCGTGCCG TCTTCGATCA CCTGATCGGC CTGCACCCAG GTTTTTTCGA AGACAATCGC
AGCTCCGAGA TCCAGTCTCG GCTGACTGCG GACACCACCT TGCTGCAATC GGTGATCGGT
TCATCGCTGT CGATGTTCCT GCGCAACGCG CTGATGGTCA TTGGTGGTGT GGTCTTGCTG
TTCATCACCA ACCCCAAGCT CACCAGCATC GTGGTGGTAA CGCTGCCACT GGTGTTGGCA
CCGATCCTGT TGTTCGGCCG TCGGGTGCGC AGCCTGTCGC GGCAGAGCCA GGACAGGGTC
GCCGATGTGG GCAGCTACGT GGCTGAAACG CTCGGGCAGA TCAAGACCGT GCAGGCCTAC
AACCACCAGG CGCACGACCG CGCATTGTTC GCCGATATGG TCGAAGCCGC GTTTACTGTT
GCCCGCAAGC GGATTACACA GCGTGCCTGG CTGATTACCC TGGTGATCGT GCTGGTGTTG
GGGGCGGTGG GGGTGATGCT GTGGGTCGGC GGCATGGATG TGATCGCCGG GCGTATATCC
GCAGGCGAGC TGGCTGCATT CGTGTTCTAC AGCCTGATCG TCGGCAGCGC CTTCGGCACC
CTCAGTGAGG TGATCGGCGA ACTGCAACGG GCCGCGGGTG CCGCCGAGCG CATTGCCGAA
CTGTTGGCCG CGCGCAGTGC CATCCTGCCG CCCGCCGTGG CGCAGGTGCT GCCACAGCCG
CGGGCCAGTG GGCGTATCGA GCTGCAGCAG GTCGTGTTCG CTTACCCTTC ACGGCCCACG
GTGGCAGCTG TCGACGGCCT GAGCCTGACC ATCGAACCCG GGCAGACCGT CGCCCTGGTA
GGCCCTTCCG GGGCAGGCAA GTCGACCCTG TTCGATCTGT TGCTGCGCTT TTACGACCCC
CAACAAGGGC GCATCCTGCT TGATGGCCTG CCGGTTACCG CATGTGATCC CGACCAGCTA
CGCCGGCAGT TCGCTTTGGT GGCACAAAAC CCCTCGCTGT TCCGTGGCAC GGTGGAGGCC
AACATTCGTT ATGGCCGGCC CGAGGCGACC TTGGCCGAAG TCGAAGCAGC AGCCCGCGGC
GCCCATGCCG ACGAATTCAT CCGGCAACTG CCCCGAGGCT ACCAGACACA ACTGGGGGAG
GGCGGCATAG GCCTTTCCGG CGGGCAACGT CAGCGCCTGG CGATTGCCCG GGCCTTGCTG
GTCGATGCGC CGATCCTGTT GCTGGACGAA GCCACCAGTG CCCTTGATGC ACAAAGCGAA
TACTTGATCC AGCAAGCGCT GCCCAGCCTG ATGGCCGGCC GTACCACGCT GGTGATCGCC
CATCGCCTGG CCACGGTGCA GCATGCCGAG CGCATCGCGG TCATCGACCA GGGCCGGCTG
GTGGCGGTGG GCACCCACCG TCAGTTGATC GAGGACAGCC CGCTGTATGC GCGGCTGGCA
GCGCTGCAGT TCACCACGGG CTAG
 
Protein sequence
MPESVSPRQR RALRLAWQFV RPYRRQVLLA LLALVVTAAI TLSMGQGIRL LVDQGFMTRS 
AHQLNQTIGL FLLLVLALAV GTFSRFYLVS WIGERCVADI RRAVFDHLIG LHPGFFEDNR
SSEIQSRLTA DTTLLQSVIG SSLSMFLRNA LMVIGGVVLL FITNPKLTSI VVVTLPLVLA
PILLFGRRVR SLSRQSQDRV ADVGSYVAET LGQIKTVQAY NHQAHDRALF ADMVEAAFTV
ARKRITQRAW LITLVIVLVL GAVGVMLWVG GMDVIAGRIS AGELAAFVFY SLIVGSAFGT
LSEVIGELQR AAGAAERIAE LLAARSAILP PAVAQVLPQP RASGRIELQQ VVFAYPSRPT
VAAVDGLSLT IEPGQTVALV GPSGAGKSTL FDLLLRFYDP QQGRILLDGL PVTACDPDQL
RRQFALVAQN PSLFRGTVEA NIRYGRPEAT LAEVEAAARG AHADEFIRQL PRGYQTQLGE
GGIGLSGGQR QRLAIARALL VDAPILLLDE ATSALDAQSE YLIQQALPSL MAGRTTLVIA
HRLATVQHAE RIAVIDQGRL VAVGTHRQLI EDSPLYARLA ALQFTTG