Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3615 |
Symbol | |
ID | 5191347 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 4038007 |
End bp | 4038666 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640588070 |
Product | two component LuxR family transcriptional regulator |
Protein accession | YP_001268923 |
Protein GI | 148548821 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.378192 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.274637 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCTGTA GACTACTGCT GGTAGATGAC CACTCGCTGA TCCGCGCCGG GGTGCGCGCA CTGGTCTGCG ATATCCCCGG CTATGACGTG GTCGGCGAAG CCGACGACGG CAACCAGCTA CTCGACCAGG TACGCACACT GGCGCCCGAC ATCATCTTGC TGGACATCTC CATGCGTTCG ACCAGCGGCC TGGACGCCCT CACCCAACTG CGGGCCAGCG GCAGTACCTG CAAAGTGCTG ATCCTCTCCA TGCACACCGA CCCGGACCTG ATCATGCGGG CGCTGGAAAG CGGTGCCCAC GGCTACCTGC TCAAGGACAC CAGCGCCACC GAGCTGGAAC AGGCGCTGGG TGCCGTACGC CACGGTGAGC GCTACCTCAG CCCGGCCATC GCCCACACCG TCATCAACCA GGCGCTGCGG CACACCAAAC AAGGCAAGCA AAGCGCTGGC GAACGGCATA ATCTGACCTC ACGGCAACTT GAGATCCTGC GCCTGATCGT GCGCGGCAAG TCCACCCGGG AAATCGCGGC GGGTCTGGGC CTGTCGATCA AGACCGTGGA AACTCACCGC TCGCAAATCA TGAAGCGCCT GCAGATTCAC GACGTGGCCG GCTTGGTGCT GTTCGCCGTA CGCGAAAAAA TCATCAGCCT GGATGACTGA
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Protein sequence | MTCRLLLVDD HSLIRAGVRA LVCDIPGYDV VGEADDGNQL LDQVRTLAPD IILLDISMRS TSGLDALTQL RASGSTCKVL ILSMHTDPDL IMRALESGAH GYLLKDTSAT ELEQALGAVR HGERYLSPAI AHTVINQALR HTKQGKQSAG ERHNLTSRQL EILRLIVRGK STREIAAGLG LSIKTVETHR SQIMKRLQIH DVAGLVLFAV REKIISLDD
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