| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3594 |
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| Symbol | |
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| ID | 5192616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4009812 |
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| End bp | 4013261 |
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| Gene Length | 3450 bp |
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| Protein Length | 1149 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588049 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001268902 |
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| Protein GI | 148548800 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.184937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCAGTTC TGCGCCTACC GCAAATGTCG GCCACGGCCG GCAAACAAAC CTGGGGCAAC
CTGCCCGGTG CCGCCCTCAG CCTTGCCATC GCCGAAGCCG CCAGCAGCGC TGGCCGCTTC
ACCCTGCTGC TGACGGCCGA CAGCCAGGCC GCCGACCGTC TGGAGCAGGA GCTGCGCTTC
TTTGCCCCAG ACCTGCCAGT GCTGCCGTTC CCCGATTGGG AAACCCTGCC CTACGACCTG
TTCTCGCCGC ACCAGGACAT CATCTCCCAG CGCATCGCCA GCCTGTACCG CCTGCCGGAG
CTGAGCCACG GCATCCTCGT GGTGCCGATC ACCACCGCCC TGCACCGCCT GGCACCCACG
CGTTTTCTGC TGGGCAGCAG CCTGGTGCTG GATGTGGGCC AGACCATCGA CGTGGAACAG
ATGCGCCTGC GCCTGGAGGC CAGCGGCTAC CGTTGTGTCG ACACCGTCTA CGAGCATGGC
GAGTTCGCCG TGCGCGGCGC GCTGATCGAC CTGTTCCCGA TGGGCAGCAA ACTGCCCTAT
CGCATCGACC TGTTCGATAA CGAGATCGAA ACGCTGCGCA CCTTCGACCC CGAGACCCAG
CGCTCGATCG ACAAGGTGGA TTCGGTGCGC CTGCTGCCGG CACGCGAATT CCCGATGCAG
AAGGAAGAAG TGACCCGCTT CAAGGCACGC TTTCGCGAGC GCTTCGACGT CGACTTCCGC
CGCAGTGCAA TCTTCCAGGA CCTGGCCAGC GGCATCATCC CCGCCGGTAT CGAGTACTAC
CTGCCGCTGT TCTTCGAAGA AACCTCGACC CTGTTCGACT ACCTGCCGAC CGACACCCAG
GTGTTCTCGC TACCCGGTGT GGAACAGGCC GCCGAGCACT TCTGGAACGA CGTGCGCGGG
CGCTATGAAG ACCGCCGCGG CGACCTCAGC CGGCCGCTGT TGCCGCCGGC CGAGCTGTTC
CTGCCGGTGG AAGATTGCTT CGCCCGGCTC AAGCAGTGGC CCCGGGTGGT GGTCAGCAGC
GAAGCGCTGG AGCCTGGCGT GGGCCGCGAG CGCTTCCCGG CGCGCGCCCT GCCCAACCTG
GCCATCGAGG CCAAGGCCAA CCAGCCGCTG GCCGAGCTGG CCAACTTCCT CGACCAGTTC
CCCGGCCGCG TGCTCTTCAC CGCCGAATCA GCGGGCCGCC GGGAAGTGCT GCTGGAACTG
CTCGAACGGC TGAAGCTGCG CCCGCATACC GTCGAAGGCT GGGACGATTT CATTACCGGT
GCCGAGCGCC TGGCGATCAC CATCGCCCCG CTGGACGACG GCCTGCTGCT GGACGATCCA
GGGCTGGCCC TGATTGCCGA AAGCCCACTG TTCGGCCAGC GAGTGATGCA GCGCCGGCGC
CGTGACAAGC GCGGCGAAAC CGCCAACGAC GCGGTCATCA AGAACCTCAC CGAGCTGCGC
GAAGGTGCGC CGGTGGTGCA CATCGACCAT GGCGTCGGGC GCTACCTGGG CCTGGCCACG
CTGGAAATCG ACGGCCAGGC CGCCGAATTC CTGACGCTGG AATACGCCGA GAACGCCAAG
CTGTATGTGC CGGTGGCCAA CCTGCACCTG ATCGCCCGCT ACACCGGCAG CGACGACGCC
CTGGCTCCGT TGCACCGGCT GGGTTCGGAG GCCTGGCAGA AAGCCAAGCG CAAGGCCGCC
GAACAGGTCC GCGACGTGGC CGCCGAACTG CTCGACATCT ATGCCCGCCG CGCCGCGCGC
AAGGGCTACG CGTTTGCCGA CCCGTCCGCC GACTACGCCA CTTTCAGCGC CGGCTTCCCG
TTCGAGGAAA CCCCGGACCA GCAGGCCGCC ATCGAGGCCG TGCGCGCCGA CATGCTGGCA
CCCAAGCCAA TGGACCGCCT GGTCTGCGGC GACGTGGGCT TCGGCAAGAC TGAAGTGGCC
ATGCGCGCGG CGTTCATCGC CGTGCACAGT GGCCGCCAGG TGGCCGTACT GGTGCCCACC
ACCCTGCTTG CCCAGCAGCA TTACAACAGC TTCCGCGACC GCTTTGCCGA CTGGCCCGTG
ACCGTGGAAG TGATGAGCCG CTTCAAATCG GCCAAAGAAG TGGCCGCCGC CGCCGCGGAC
CTTGCCGAAG GCAAGATCGA CATTCTCATC GGCACCCACA AGCTGCTGCA GGACGACGTA
CGCTTCAAAG ACCTGGGCCT GGCCATCATC GATGAAGAGC ACCGCTTTGG CGTGCGCCAG
AAAGAACAGC TGAAGGCGCT GCGCAGCGAG GTCGATATCC TCACCCTGAC CGCCACGCCG
ATTCCGCGCA CGCTGAACAT GGCGGTGGCG GGCATGCGCG ACCTGTCGAT CATCGCCACG
CCGCCAGCAC GCCGCCTGTC GGTGCGCACC TTCGTCATGG AACAGAACAA GAGCACGGTC
AAGGAGGCGC TGCTGCGCGA ACTGTTGCGC GGTGGCCAGG TGTATTACCT GCACAACGAT
GTGAAAACCA TCGAAAAATG CGCCGCCGAC CTTGCCGAGC TGGTGCCCGA GGCACGCATC
GGCATCGGCC ACGGGCAAAT GCGCGAACGC GAGCTGGAAC AGGTGATGAG CGATTTCTAC
CACAAGCGTT TCAACGTGCT GGTGGCCTCG ACCATTATCG AAACCGGTAT CGACGTGCCC
AGCGCCAACA CGATCGTCAT CGAGCGCGCC GACAAGTTCG GCCTGGCCCA GCTGCACCAG
CTGCGTGGCC GGGTTGGCCG TAGTCACCAC CAGGCCTACG CCTACCTGCT CACACCTACC
CGTCAGAAGG TGAGCGCCGA CGCCGAAAAG CGCCTGGAGG CGATCGCCAA CACGCAAGAC
CTTGGCGCAG GCTTTGTGCT GGCCACCAAC GACCTGGAAA TCCGCGGTGC CGGCGAGCTG
CTGGGCGAAG GCCAGAGTGG GCAGATCCAG GCAGTGGGCT TCACCCTGTA CATGGAAATG
CTCGAACGTG CGGTCAAGGC AATCCGAAAA GGTACCCAGC CGAACCTTGA GCAACCCCTG
GGTGGCGGCC CGGAGATCAA CCTGCGCCTG CCGGCACTGA TCCCCGAGGA CTACCTGCCT
GACGTGCATG CGCGCCTGAT CCTGTACAAA CGCATTGCCT CGGCTGCCGA CGAAGAAGGC
CTCAAGGACT TGCAGGTCGA GATGATCGAC CGCTTCGGCT TGCTGCCAGA GCCGACCAAG
AACCTGATGC GCCTGACGTC ACTCAAGCTG CACGCGGAAA AGCTCGGCAT CAAGAAAGTC
GATGCGGGGC CCAACGGTGG CAAGCTCGAG TTCGAAGCCG AAACACCGGT CGACCCACTG
ACCCTGATCA AGCTGATCCA GGGTCAACCC AAACGCTACA AGTTCGAAGG CGCCACCCAG
TTCCGCTTCC TGGTACCGAT GGAACGCCCC GACGAACGTT TCAATACCCT GGAGGCGCTG
TTCGAGCGCC TGACCCCACA GCCTGCCTAA
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| Protein sequence | MSVLRLPQMS ATAGKQTWGN LPGAALSLAI AEAASSAGRF TLLLTADSQA ADRLEQELRF
FAPDLPVLPF PDWETLPYDL FSPHQDIISQ RIASLYRLPE LSHGILVVPI TTALHRLAPT
RFLLGSSLVL DVGQTIDVEQ MRLRLEASGY RCVDTVYEHG EFAVRGALID LFPMGSKLPY
RIDLFDNEIE TLRTFDPETQ RSIDKVDSVR LLPAREFPMQ KEEVTRFKAR FRERFDVDFR
RSAIFQDLAS GIIPAGIEYY LPLFFEETST LFDYLPTDTQ VFSLPGVEQA AEHFWNDVRG
RYEDRRGDLS RPLLPPAELF LPVEDCFARL KQWPRVVVSS EALEPGVGRE RFPARALPNL
AIEAKANQPL AELANFLDQF PGRVLFTAES AGRREVLLEL LERLKLRPHT VEGWDDFITG
AERLAITIAP LDDGLLLDDP GLALIAESPL FGQRVMQRRR RDKRGETAND AVIKNLTELR
EGAPVVHIDH GVGRYLGLAT LEIDGQAAEF LTLEYAENAK LYVPVANLHL IARYTGSDDA
LAPLHRLGSE AWQKAKRKAA EQVRDVAAEL LDIYARRAAR KGYAFADPSA DYATFSAGFP
FEETPDQQAA IEAVRADMLA PKPMDRLVCG DVGFGKTEVA MRAAFIAVHS GRQVAVLVPT
TLLAQQHYNS FRDRFADWPV TVEVMSRFKS AKEVAAAAAD LAEGKIDILI GTHKLLQDDV
RFKDLGLAII DEEHRFGVRQ KEQLKALRSE VDILTLTATP IPRTLNMAVA GMRDLSIIAT
PPARRLSVRT FVMEQNKSTV KEALLRELLR GGQVYYLHND VKTIEKCAAD LAELVPEARI
GIGHGQMRER ELEQVMSDFY HKRFNVLVAS TIIETGIDVP SANTIVIERA DKFGLAQLHQ
LRGRVGRSHH QAYAYLLTPT RQKVSADAEK RLEAIANTQD LGAGFVLATN DLEIRGAGEL
LGEGQSGQIQ AVGFTLYMEM LERAVKAIRK GTQPNLEQPL GGGPEINLRL PALIPEDYLP
DVHARLILYK RIASAADEEG LKDLQVEMID RFGLLPEPTK NLMRLTSLKL HAEKLGIKKV
DAGPNGGKLE FEAETPVDPL TLIKLIQGQP KRYKFEGATQ FRFLVPMERP DERFNTLEAL
FERLTPQPA
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