| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3592 |
|---|
| Symbol | |
|---|
| ID | 5192191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 4007003 |
|---|
| End bp | 4008001 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640588047 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_001268900 |
|---|
| Protein GI | 148548798 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.481358 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGCACAG CCCTACTGTT CATTCTGCTG CTACTCACCG CCTGCAACCA GGGCCCCACC
CTGGAGCGCC TGGGTGGCCC GACCATGGGC AGCAGCTACA GCATCCAGTA CGTCCGCGAG
CCTGGTGGCC CGGAGCCGGC CCAGGTGCAG AGGGCGGTGG AAACCATCCT GCACGACATC
GACCACCACT ACTCGACCTA CCGCGGCGAT TCCATCGTAA GCCAGTTCAA CCGCTTGCCT
GCCGGCCAGT GCCTGGCCCT GCCGCCTGAC ATGCTCGCGT TGGTCAGCCT GGGCCAGCAC
CTTGCCGAGC AGAGCGATGG CGCCTTCGAT CTCACGGTAG AGCCTTTGCT CGATCTGTGG
GGCTTCGGCC CTCAGGCCCG TCACCAGCAG GTGCCCGAAC CACAGGCACT GGCCCAGGTA
CGCCAGCGTG TGGGCTACCA GCACCTGCGC GTCAAAGGTC GAGCCCTGTG CAAGGATGCC
CCGGTGCAGC TCGACTTCAA CAGTATCGTC GCCGGTCATG CTGTCGACTT GATCGCTGCG
CGCCTGCAGG CCATGGGTGT CAGCAGTTTT GTCGCCGAGG CCACTGGCGA GCTGAAGGCG
GTTGGCCGCA AGCCTGACGG CAGCCCTTGG CGTATTGCCC TGGAACTGCC CCGCGAAGAC
CGTCAGATCG CTCGCCAAAT TATTCCGGTC AATAGCCTTT CAGTATCAAC CTCGGGTGAC
TATCGGCACT ATTTCGAGCA GAATGGCCGG CGCTATTCGC ACACCTTCGA TGCCCGCCTC
GGGCGCCCGG TCGAACATGA CCTGGCTGCC GTTACGGTGC TGGACGCCTC AGCACTGCTG
GCCGATGGCT ATTCGACGCT GCTACTCATC CTGGGCCCAC AGCAAGGCTG GGATTTTGCC
GTGGCGCATG ACTTGGCGGC GGTTTTGGTG ACTCGAGCAG AGGGAGGCTT CGTCTCCCGA
GCTACGCCCG CGTTCGAACG GGCAGTGAAA GGCCAGTGA
|
|---|
| Protein sequence | MRTALLFILL LLTACNQGPT LERLGGPTMG SSYSIQYVRE PGGPEPAQVQ RAVETILHDI
DHHYSTYRGD SIVSQFNRLP AGQCLALPPD MLALVSLGQH LAEQSDGAFD LTVEPLLDLW
GFGPQARHQQ VPEPQALAQV RQRVGYQHLR VKGRALCKDA PVQLDFNSIV AGHAVDLIAA
RLQAMGVSSF VAEATGELKA VGRKPDGSPW RIALELPRED RQIARQIIPV NSLSVSTSGD
YRHYFEQNGR RYSHTFDARL GRPVEHDLAA VTVLDASALL ADGYSTLLLI LGPQQGWDFA
VAHDLAAVLV TRAEGGFVSR ATPAFERAVK GQ
|
|---|
| |