Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3588 |
Symbol | |
ID | 5192356 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 4002679 |
End bp | 4003929 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640588043 |
Product | LolC/E family lipoprotein releasing system, transmembrane protein |
Protein accession | YP_001268896 |
Protein GI | 148548794 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.488659 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTCAGAC CTCTTTTCGC ATTCATCGGT ACGCGTTATA CCCGTGCCAA ACGTCGCAAT CACTTCGTCT CGTTCATTTC CCTGACCTCG ATGATCGGCC TCGCCCTGGG CGTGGTGGTA ATGATCGTGG TGCTGTCGGT GATGAACGGT TTCGACCACG AGATGCGCAC CCGCGTGTTG GGGATGATTC CCCATGCCAC GCTGGAGAGC GGCCAGCCCA TTGCCGACTG GCAGGCCCTT GCCCAACAAG TAAAGCAGAA TCCGCAGGTG GTGGCGGTTG CACCGTTCAC CCAGATGCAG GGCCTGCTGA CCCATGATGG CAAGGTGCAG AAGGTGCTGC TCAACGGCAT CGACCCTGCT CGCGAGCGCG AGGTGTCGAT CATCGACAAC TTCGTCCTGC AAGGCCGCCT GGACCAGTTG GCGCCGGGCG AGTGGGGCAT CATGATCGGC GACAAGGCGG CGGCCAAGCT GGGCGTTGCC ATCGGCGACA AGCTCACCTT CGTCGCCCCC GAGGTCAGCG TGACCCCCGC CGGCATGTTC CCGCGCATGA AGCGCTTCAC CGTAGTCGGC ACCTTCCACG TTGGCGCGGG GGAGATCGAC GGCTACCTGG GCCTGACCAA CATCAGCGAC CTGTCCCGCC TGCACCGCTG GAAGCCCGAC CAGGTCCAGG GCCTGCGCCT GAAGTTCGAC GACCTGTTCC AGGCGCCGCG TGTAGCCTGG AGCATCGCCC AGCAGCTGGG CGAACAGGAG TTCTATAGCC GTGACTGGAC CCGTACCCAC GGCAACCTGT ACCAGGCGAT CCGTATGGAA AAGGCCATGA TCGGCCTGCT GTTGCTGCTG ATCGTGGCGG TGGCGGCGTT CAACATCATT TCCACCCTGG TGATGGTGGT CAACGACAAG CGCGGCGACA TCGCCATCCT GCGCACCCTG GGCGCCACGC CCGGGCAGAT CATGCTCATC TTCATGGTCC AGGGTACGGT GATCGGGGTG ATCGGTACCC TGATCGGCGC CGTCGTCGGG ATCTTCGCGG CCCTGAACGT GAGCGCGGCG ATCGCCGGCA TCGAGACACT GATCGGCCAC AAGTTCCTCA ACGCCGACGT GTACTTCATC GATTACCTGC CGTCGCAGAT CCTGGCCCAG GACGTGTACA TGGTCTGCGG TGCGGCACTG GTCCTGAGTT TCTTCGCCAC CCTGTATCCG GCCTGGCGTG CGGCCCGCAC CCAGCCTGCA GAGGCGCTAC GTTATGAGTG A
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Protein sequence | MFRPLFAFIG TRYTRAKRRN HFVSFISLTS MIGLALGVVV MIVVLSVMNG FDHEMRTRVL GMIPHATLES GQPIADWQAL AQQVKQNPQV VAVAPFTQMQ GLLTHDGKVQ KVLLNGIDPA REREVSIIDN FVLQGRLDQL APGEWGIMIG DKAAAKLGVA IGDKLTFVAP EVSVTPAGMF PRMKRFTVVG TFHVGAGEID GYLGLTNISD LSRLHRWKPD QVQGLRLKFD DLFQAPRVAW SIAQQLGEQE FYSRDWTRTH GNLYQAIRME KAMIGLLLLL IVAVAAFNII STLVMVVNDK RGDIAILRTL GATPGQIMLI FMVQGTVIGV IGTLIGAVVG IFAALNVSAA IAGIETLIGH KFLNADVYFI DYLPSQILAQ DVYMVCGAAL VLSFFATLYP AWRAARTQPA EALRYE
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