Gene Pput_3552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3552 
Symbol 
ID5192296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp3968317 
End bp3971199 
Gene Length2883 bp 
Protein Length960 aa 
Translation table11 
GC content65% 
IMG OID640588008 
Productformate dehydrogenase, alpha subunit 
Protein accessionYP_001268861 
Protein GI148548759 
COG category[R] General function prediction only 
COG ID[COG3383] Uncharacterized anaerobic dehydrogenase 
TIGRFAM ID[TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATCAATT TCTTCGACCC CGCTTGTGAT AAAAGCAGCG ACCTCGGCAC CCCGGCCCGC 
GAAAGCGACG TGCAGGTCAG CCTGAGCATC GATGGCCGCG CCATCAGCGT GCCTGCTGGC
ACCTCGGTCA TGCGCGCCGC CGCCATGCTG GGCACCAGCA TCCCCAAACT GTGCGCCACC
GACAGCCTTG AAGCCTTCGG CTCCTGCCGC ATGTGCATGG TGGAAATCGA AGGCATGCGT
GGCTACCCGG CGTCCTGCAC CACGCCAGTC AGTGAAGGCA TGGTGGTGCG CACCGAAACC
CCGCGCCTGG CCGGCCTGCG TCGCAACGTG ATGGAGCTGT ATATTTCCGA CCACCCGCTG
GACTGCCTGA CCTGTTCGGC CAACGGCAAC TGCGAGCTGC AGACCGTGGC CGGCCAGGTG
GGCCTGCGTG AGGTGCGCTA CGGCTATGAC GGCGCCAACC ACCTGGACGA GAAAAAAGAC
GTTTCCAACC CGTATTTCGA CTACGAGCCG AGCAAGTGCA TCGTCTGCAG CCGCTGTGTG
CGCGCCTGCG AGGACATCCA GGGTACGTTC GCCCTGACCA TTACCGGGCG CGGTTTCGAA
TCGCGGGTGG CGGCCGCGGG GGGCGAAAAC TTCCTGGCTT CCGAATGCGT GTCGTGCGGC
GCCTGCGTGC AGGCCTGCCC GACCGCGACC CTGACGGAAA AGAGCCTGGT GCAGCTTGGC
CAGCCTGAGC GTTCGGTCAT TACCACCTGC GCCTACTGCG GCGTTGGTTG CTCGTTCCGC
GCCGAAATCA AGGGTGACCA ACTGGTGCGC ATGGTCCCGG ACAAGAACGG TGGCGCCAAC
CACGGCCACG CCTGCGTCAA GGGCCGCTTT GCCTGGGGCT ACGCCACCCA CCCGGACCGC
ATCACCAAAC CGATGATCCG CAAGCGCCTG GAAGACCCGT GGCAGGAAGT CAGCTGGGAC
GAGGCCGTGA CCTATGCCGC CAGCGAGTTC CGCCGCATCC AGCTCAAGTA CGGGCGCGAC
TCCATCGGCG GCATCACCTC CAGCCGTTGT ACCAACGAAG AAGCCTACCT GGTGCAAAAA
CTGGTGCGCA CGGCGTTTGG TAACAACAAC GTCGACACCT GCGCACGGGT GTGCCATTCG
CCCACCGGTT ATGGCCTGAA GCAGACCCTG GGTGAGTCAG CCGGCACGCA AAGCTTCGAC
TCGGTGATGC AGGCCGACGT TGTGCTGGTG ATTGGCGCCA ACCCTACCGA TGCGCACCCG
GTGTTCGGCT CGCAACTCAA GCGTCGCCTG CGCCAAGGGG CGCGGCTGAT CGTGATCGAC
CCACGGCGTA TCGACCTGGT CGACGCGCCG CACGCCCGCG CCGACCTGCA CCTGCAACTG
CGCCCGGGCA CCAACGTGGC CATGCTCAAC GCCCTGGCCC ACGTGATCGT TACCGAGGGC
CTGCTGGCCC AAAGCTTCAT CGATGCCCGC TGCGAAACCG AAGACTTCGC CCGTTGGCGC
GACTTCGTCA GCCTGCCAGA CAACGCCCCC GAGGTGCTTG GCCCGGTTTG TGGCGTGCCT
GCTGAGCAGA TCCGCGCTGC GGCCCGGCTG TATGCCACCG GCGGCAACGC GGCCATCTAC
TACGGCCTGG GTGTGACCGA GCACAGCCAA GGCAGCACCG CAGTGATGGG CATTGCCAAC
CTGGCCATGG CCACTGGCAA CATCGGCCGT GAAGGGGTAG GGGTGAACCC GCTGCGCGGG
CAGAACAACG TGCAGGGCTC GTGCGACATG GGCTCGTTCC CCCACGAGCT GCCCGGCTAC
CGGCATGTCT CCAACGAGGG CGTGCGCGCC GAGTTCGAAC GGGCCTGGGG TGTGACCTTG
CAGCCTGACC CGGGTCTGCG CATTCCCAAC ATGTTCGAGG CGGCGCTGGA TGGCAGCTTC
AAGGCGCTGT ACTGCCAGGG TGAGGACATC GCCCAGAGCG ACCCCAACAC CCAGCACGTC
ACGGCGGCCT TGCTCGCCAT GGAGTGCGTG GTGGTGCAGG ACATTTTCCT CAACGAAACT
GCCAAGTTCG CCCATGTGTT CCTGCCGGGC AGTTCGTTCC TGGAAAAGGA CGGCACCTTC
ACCAACGCCG AGCGGCGTAT TTCGCGGGTG CGCAAGGTCA TGGAGCCGCT GGCCGGCAAG
GCCGACTGGG AAGCTACCGT GGCCCTGGCC AACGCTCTGG GCTACCCGAT GAACTACCGC
CACCCGTCCG AGATCATGGA CGAGATCGCC CGCCTGACGC CGACCTTCCG TCGTGTCAGC
TACGCGGAAA TCGACCGCCA TGGCAGCCTG CAGTGGCCGT GCAACGACGC TGCGCCAGAC
GGCACGCCGA CCATGCACAT CGACCAGTTC GTGCGTGGCA AGGGCCGCTT CATGCTCACC
GGCTACGTGC CCACCGACGA AAAGGTCAAC AACCGCTACC CGTTGCTGCT GACTACCGGT
CGTATCCTCA GCCAGTACAA CGTCGGCGCC CAGACCCGGC GCACTGCCAA CGTTGCCTGG
CATGATGCCG ACCGCCTGGA GATCCACCCG ACCGACGCGG AAAGCCGTGG CATCCACGAC
GGTGACTGGG TCGGCATCGG CAGCCGCGCC GGGCAGACTG TGCTGCGTGC CAAGGTCAGT
GCGCGGGTGG CGCCGGGCGT GGTGTACACC ACCTTCCACT TCCCGGAGTC GGGTGCCAAC
GTGATCACCA CCGACAACTC CGACTGGGCA ACCAACTGCC CCGAGTACAA GGTGACGGCA
GTGGAAGTGG TGAAAGTGTT CCAGCCATCG CAATGGCAGA AGCGCTATCA GGACTTCAGT
GATGAACAGC AGCGGCTGCT GAAAGAGCGC CGTGCTGCGG AGAAAGCCGA GGTTCGCCGA
TGA
 
Protein sequence
MINFFDPACD KSSDLGTPAR ESDVQVSLSI DGRAISVPAG TSVMRAAAML GTSIPKLCAT 
DSLEAFGSCR MCMVEIEGMR GYPASCTTPV SEGMVVRTET PRLAGLRRNV MELYISDHPL
DCLTCSANGN CELQTVAGQV GLREVRYGYD GANHLDEKKD VSNPYFDYEP SKCIVCSRCV
RACEDIQGTF ALTITGRGFE SRVAAAGGEN FLASECVSCG ACVQACPTAT LTEKSLVQLG
QPERSVITTC AYCGVGCSFR AEIKGDQLVR MVPDKNGGAN HGHACVKGRF AWGYATHPDR
ITKPMIRKRL EDPWQEVSWD EAVTYAASEF RRIQLKYGRD SIGGITSSRC TNEEAYLVQK
LVRTAFGNNN VDTCARVCHS PTGYGLKQTL GESAGTQSFD SVMQADVVLV IGANPTDAHP
VFGSQLKRRL RQGARLIVID PRRIDLVDAP HARADLHLQL RPGTNVAMLN ALAHVIVTEG
LLAQSFIDAR CETEDFARWR DFVSLPDNAP EVLGPVCGVP AEQIRAAARL YATGGNAAIY
YGLGVTEHSQ GSTAVMGIAN LAMATGNIGR EGVGVNPLRG QNNVQGSCDM GSFPHELPGY
RHVSNEGVRA EFERAWGVTL QPDPGLRIPN MFEAALDGSF KALYCQGEDI AQSDPNTQHV
TAALLAMECV VVQDIFLNET AKFAHVFLPG SSFLEKDGTF TNAERRISRV RKVMEPLAGK
ADWEATVALA NALGYPMNYR HPSEIMDEIA RLTPTFRRVS YAEIDRHGSL QWPCNDAAPD
GTPTMHIDQF VRGKGRFMLT GYVPTDEKVN NRYPLLLTTG RILSQYNVGA QTRRTANVAW
HDADRLEIHP TDAESRGIHD GDWVGIGSRA GQTVLRAKVS ARVAPGVVYT TFHFPESGAN
VITTDNSDWA TNCPEYKVTA VEVVKVFQPS QWQKRYQDFS DEQQRLLKER RAAEKAEVRR