Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3552 |
Symbol | |
ID | 5192296 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 3968317 |
End bp | 3971199 |
Gene Length | 2883 bp |
Protein Length | 960 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640588008 |
Product | formate dehydrogenase, alpha subunit |
Protein accession | YP_001268861 |
Protein GI | 148548759 |
COG category | [R] General function prediction only |
COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGATCAATT TCTTCGACCC CGCTTGTGAT AAAAGCAGCG ACCTCGGCAC CCCGGCCCGC GAAAGCGACG TGCAGGTCAG CCTGAGCATC GATGGCCGCG CCATCAGCGT GCCTGCTGGC ACCTCGGTCA TGCGCGCCGC CGCCATGCTG GGCACCAGCA TCCCCAAACT GTGCGCCACC GACAGCCTTG AAGCCTTCGG CTCCTGCCGC ATGTGCATGG TGGAAATCGA AGGCATGCGT GGCTACCCGG CGTCCTGCAC CACGCCAGTC AGTGAAGGCA TGGTGGTGCG CACCGAAACC CCGCGCCTGG CCGGCCTGCG TCGCAACGTG ATGGAGCTGT ATATTTCCGA CCACCCGCTG GACTGCCTGA CCTGTTCGGC CAACGGCAAC TGCGAGCTGC AGACCGTGGC CGGCCAGGTG GGCCTGCGTG AGGTGCGCTA CGGCTATGAC GGCGCCAACC ACCTGGACGA GAAAAAAGAC GTTTCCAACC CGTATTTCGA CTACGAGCCG AGCAAGTGCA TCGTCTGCAG CCGCTGTGTG CGCGCCTGCG AGGACATCCA GGGTACGTTC GCCCTGACCA TTACCGGGCG CGGTTTCGAA TCGCGGGTGG CGGCCGCGGG GGGCGAAAAC TTCCTGGCTT CCGAATGCGT GTCGTGCGGC GCCTGCGTGC AGGCCTGCCC GACCGCGACC CTGACGGAAA AGAGCCTGGT GCAGCTTGGC CAGCCTGAGC GTTCGGTCAT TACCACCTGC GCCTACTGCG GCGTTGGTTG CTCGTTCCGC GCCGAAATCA AGGGTGACCA ACTGGTGCGC ATGGTCCCGG ACAAGAACGG TGGCGCCAAC CACGGCCACG CCTGCGTCAA GGGCCGCTTT GCCTGGGGCT ACGCCACCCA CCCGGACCGC ATCACCAAAC CGATGATCCG CAAGCGCCTG GAAGACCCGT GGCAGGAAGT CAGCTGGGAC GAGGCCGTGA CCTATGCCGC CAGCGAGTTC CGCCGCATCC AGCTCAAGTA CGGGCGCGAC TCCATCGGCG GCATCACCTC CAGCCGTTGT ACCAACGAAG AAGCCTACCT GGTGCAAAAA CTGGTGCGCA CGGCGTTTGG TAACAACAAC GTCGACACCT GCGCACGGGT GTGCCATTCG CCCACCGGTT ATGGCCTGAA GCAGACCCTG GGTGAGTCAG CCGGCACGCA AAGCTTCGAC TCGGTGATGC AGGCCGACGT TGTGCTGGTG ATTGGCGCCA ACCCTACCGA TGCGCACCCG GTGTTCGGCT CGCAACTCAA GCGTCGCCTG CGCCAAGGGG CGCGGCTGAT CGTGATCGAC CCACGGCGTA TCGACCTGGT CGACGCGCCG CACGCCCGCG CCGACCTGCA CCTGCAACTG CGCCCGGGCA CCAACGTGGC CATGCTCAAC GCCCTGGCCC ACGTGATCGT TACCGAGGGC CTGCTGGCCC AAAGCTTCAT CGATGCCCGC TGCGAAACCG AAGACTTCGC CCGTTGGCGC GACTTCGTCA GCCTGCCAGA CAACGCCCCC GAGGTGCTTG GCCCGGTTTG TGGCGTGCCT GCTGAGCAGA TCCGCGCTGC GGCCCGGCTG TATGCCACCG GCGGCAACGC GGCCATCTAC TACGGCCTGG GTGTGACCGA GCACAGCCAA GGCAGCACCG CAGTGATGGG CATTGCCAAC CTGGCCATGG CCACTGGCAA CATCGGCCGT GAAGGGGTAG GGGTGAACCC GCTGCGCGGG CAGAACAACG TGCAGGGCTC GTGCGACATG GGCTCGTTCC CCCACGAGCT GCCCGGCTAC CGGCATGTCT CCAACGAGGG CGTGCGCGCC GAGTTCGAAC GGGCCTGGGG TGTGACCTTG CAGCCTGACC CGGGTCTGCG CATTCCCAAC ATGTTCGAGG CGGCGCTGGA TGGCAGCTTC AAGGCGCTGT ACTGCCAGGG TGAGGACATC GCCCAGAGCG ACCCCAACAC CCAGCACGTC ACGGCGGCCT TGCTCGCCAT GGAGTGCGTG GTGGTGCAGG ACATTTTCCT CAACGAAACT GCCAAGTTCG CCCATGTGTT CCTGCCGGGC AGTTCGTTCC TGGAAAAGGA CGGCACCTTC ACCAACGCCG AGCGGCGTAT TTCGCGGGTG CGCAAGGTCA TGGAGCCGCT GGCCGGCAAG GCCGACTGGG AAGCTACCGT GGCCCTGGCC AACGCTCTGG GCTACCCGAT GAACTACCGC CACCCGTCCG AGATCATGGA CGAGATCGCC CGCCTGACGC CGACCTTCCG TCGTGTCAGC TACGCGGAAA TCGACCGCCA TGGCAGCCTG CAGTGGCCGT GCAACGACGC TGCGCCAGAC GGCACGCCGA CCATGCACAT CGACCAGTTC GTGCGTGGCA AGGGCCGCTT CATGCTCACC GGCTACGTGC CCACCGACGA AAAGGTCAAC AACCGCTACC CGTTGCTGCT GACTACCGGT CGTATCCTCA GCCAGTACAA CGTCGGCGCC CAGACCCGGC GCACTGCCAA CGTTGCCTGG CATGATGCCG ACCGCCTGGA GATCCACCCG ACCGACGCGG AAAGCCGTGG CATCCACGAC GGTGACTGGG TCGGCATCGG CAGCCGCGCC GGGCAGACTG TGCTGCGTGC CAAGGTCAGT GCGCGGGTGG CGCCGGGCGT GGTGTACACC ACCTTCCACT TCCCGGAGTC GGGTGCCAAC GTGATCACCA CCGACAACTC CGACTGGGCA ACCAACTGCC CCGAGTACAA GGTGACGGCA GTGGAAGTGG TGAAAGTGTT CCAGCCATCG CAATGGCAGA AGCGCTATCA GGACTTCAGT GATGAACAGC AGCGGCTGCT GAAAGAGCGC CGTGCTGCGG AGAAAGCCGA GGTTCGCCGA TGA
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Protein sequence | MINFFDPACD KSSDLGTPAR ESDVQVSLSI DGRAISVPAG TSVMRAAAML GTSIPKLCAT DSLEAFGSCR MCMVEIEGMR GYPASCTTPV SEGMVVRTET PRLAGLRRNV MELYISDHPL DCLTCSANGN CELQTVAGQV GLREVRYGYD GANHLDEKKD VSNPYFDYEP SKCIVCSRCV RACEDIQGTF ALTITGRGFE SRVAAAGGEN FLASECVSCG ACVQACPTAT LTEKSLVQLG QPERSVITTC AYCGVGCSFR AEIKGDQLVR MVPDKNGGAN HGHACVKGRF AWGYATHPDR ITKPMIRKRL EDPWQEVSWD EAVTYAASEF RRIQLKYGRD SIGGITSSRC TNEEAYLVQK LVRTAFGNNN VDTCARVCHS PTGYGLKQTL GESAGTQSFD SVMQADVVLV IGANPTDAHP VFGSQLKRRL RQGARLIVID PRRIDLVDAP HARADLHLQL RPGTNVAMLN ALAHVIVTEG LLAQSFIDAR CETEDFARWR DFVSLPDNAP EVLGPVCGVP AEQIRAAARL YATGGNAAIY YGLGVTEHSQ GSTAVMGIAN LAMATGNIGR EGVGVNPLRG QNNVQGSCDM GSFPHELPGY RHVSNEGVRA EFERAWGVTL QPDPGLRIPN MFEAALDGSF KALYCQGEDI AQSDPNTQHV TAALLAMECV VVQDIFLNET AKFAHVFLPG SSFLEKDGTF TNAERRISRV RKVMEPLAGK ADWEATVALA NALGYPMNYR HPSEIMDEIA RLTPTFRRVS YAEIDRHGSL QWPCNDAAPD GTPTMHIDQF VRGKGRFMLT GYVPTDEKVN NRYPLLLTTG RILSQYNVGA QTRRTANVAW HDADRLEIHP TDAESRGIHD GDWVGIGSRA GQTVLRAKVS ARVAPGVVYT TFHFPESGAN VITTDNSDWA TNCPEYKVTA VEVVKVFQPS QWQKRYQDFS DEQQRLLKER RAAEKAEVRR
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