Gene Pput_3398 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3398 
Symbol 
ID5193660 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp3813463 
End bp3814305 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content58% 
IMG OID640587846 
Productputative phage repressor 
Protein accessionYP_001268708 
Protein GI148548606 
COG category[K] Transcription 
COG ID[COG2932] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0077186 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTACCG GACCCGAATT AGGTGCAGCC ATTGATGCTG CGCGGATCGC CAAGGGCGTA 
TCGAAGAAAC AGCTTGCAGA CGACTTCCAG GTGAAGCCTC CGTCGGTACA GGGCTGGGTG
AAAAACGGCC GGATCGACAA GTCCAAGCTG ATGGACGTGA TCGCTTACTT TTCTGACGTT
GTTGGTCCTG AGCACTGGGG GCTTCGCCCT GGCTTCTCCT ACGAGAGCAT CCAGGAGGTA
ACTTCGGAAC CTGTCACAGA GACGGCGCCG ACCTCAGCTG CCGACATGGT TCGCGCCATG
CTCGCCAAGC AAGGTAAGAA CTTGTCGGAT TCGGCGCGCG CGCAGTTGAT TGCAGCCGCC
GAAGCGACCG ATGAGGGAAA TGTGATTACC GTAGACTTCA CCCGACCTGG CTTGGTCGGG
GACGAGGTTC GGATCGCACA CTACGATATT CGCGCAGCAA TGGGTGGCGG CCAGCTCCCC
CACGACTACC CGGAAATGCT CAAGGACATT CGCGTCAGCC CCAGCCACTT GCGGGAAATC
GGCGTCGAGT TCGAAGAGCA CTACCACCTG AAGGTGGTCA CCGGCTGGGG CCAGTCGATG
GAGCCCACCA TCAAACATCG CGACCCGCTG ATCGTGAATA TCAACGTCCG CGACTTCGTG
GGCGATGGGG TGTACCTCTT CGTCTGGGAC GACCTGCTTT ACATCAAGCG CCTGCAGGTG
GCTGATGAGG AGCACTACGA GATGATCTCG GACAACCCGC GGCACAAGGA TCGTCTAATC
CGACGAGATA TGACCTACAT CCAAGCTCGG GTTCTGCTGG TGTGGAATGC ACATCTCGTT
TGA
 
Protein sequence
MLTGPELGAA IDAARIAKGV SKKQLADDFQ VKPPSVQGWV KNGRIDKSKL MDVIAYFSDV 
VGPEHWGLRP GFSYESIQEV TSEPVTETAP TSAADMVRAM LAKQGKNLSD SARAQLIAAA
EATDEGNVIT VDFTRPGLVG DEVRIAHYDI RAAMGGGQLP HDYPEMLKDI RVSPSHLREI
GVEFEEHYHL KVVTGWGQSM EPTIKHRDPL IVNINVRDFV GDGVYLFVWD DLLYIKRLQV
ADEEHYEMIS DNPRHKDRLI RRDMTYIQAR VLLVWNAHLV