Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3328 |
Symbol | |
ID | 5193377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 3749895 |
End bp | 3751082 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640587775 |
Product | major facilitator transporter |
Protein accession | YP_001268638 |
Protein GI | 148548536 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.933916 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGCTC AAACAATGAG ACCCGGCCGC GTGCTCTTCG CGTTGGCCAT TGGCGCCTTT GGCATCGGCA CTACCGAGTT CACCCCGATG GGGCTACTGC CAGTCATCGC CCAGGGCGTG GAGGTGAGCA TCCCCAGCGC CGGTATGCTG ATCACCGCCT ATGCCATTGG CGTGATGGTC GGCGCGCCGA TCATGACCTT GCTGTTCAGC CGCTTTGGGA AGCGCGCTGC GCTGATGGCG CTGATGGCCA TCTTCACCCT TGGTAACCTG CTGTCGTCAC TGTCGCCGGA CTACTACACC CTGCTCGCTT CGCGGCTGGT CACCAGCCTC AACCATGGTG CGTTCTTCGG CCTGGGAGCC GTGGTGGCAG CCAGCGTGGT GCCCAAGGAG AAACAGGCCA GCGCCGTGGC CACCATGTTC ATGGGCCTGA CCATCGCCAA CATCGGCGGC GTGCCGGCCG CCACCTGGAT TGGCCAGCAG ATCGGCTGGC GCATGGCATT TGCCGGTACC GCCGTACTTG GCCTGCTGGC CATGGCCGCG CTGTGGTACG CCCTGCCCAA GGGTGAACGC GGCAGCGTGC CGCATGTGCG CCAGGAACTG GCGGTCATTG CCCGCCCCAG CGTGCTGCTG GCAATGGCCA CCACCGTGCT CGGTGCCGGT GCCATGTTCA CCTTGTACAC CTACGTGGCG CCGGTGCTGG CCGAACTGAC CGGTGCCTCG GACGGCTTCG TAACCTTGGG ACTGGTACTG ATCGGGGTTG GCTTCACCCT TGGCAACAGC CTGGGTGGCC GCCTGGCCGA CTGGTCACTG GATGGCGCGG CGAAAATCTT CCTCGCCGTG CTGGCGCTGA TCATGCTGGC GATGCCCCTG GTACTGGGTA GCCACCTTGG CGCAGCCATC GCCCTGCTGG TCTGGGGCAT GTTCACCTTC GCCGTGGTAC CACCGCTGCA AATGCGTGTA ATGACTGCCG CCATCGAGGC ACCAGGCCTG GCGTCGTCGA TCAACGTGGG TGCGTTCAAC CTGGGTAACG CCGTGGGCGC GGCGCTGGGT GGTGCGGTTA TCAGCCTGAA CCTGGGCTAC GCCGCCGTGC CGATGGCCGG AGGTGTGCTG GCAGCTGCGG GGCTGTTGCT GGTATGGCTG GGCGGGCGCC ACAAGGTCGC CGGCAAGACC GCAGCCGATA TGGCCTGA
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Protein sequence | MTAQTMRPGR VLFALAIGAF GIGTTEFTPM GLLPVIAQGV EVSIPSAGML ITAYAIGVMV GAPIMTLLFS RFGKRAALMA LMAIFTLGNL LSSLSPDYYT LLASRLVTSL NHGAFFGLGA VVAASVVPKE KQASAVATMF MGLTIANIGG VPAATWIGQQ IGWRMAFAGT AVLGLLAMAA LWYALPKGER GSVPHVRQEL AVIARPSVLL AMATTVLGAG AMFTLYTYVA PVLAELTGAS DGFVTLGLVL IGVGFTLGNS LGGRLADWSL DGAAKIFLAV LALIMLAMPL VLGSHLGAAI ALLVWGMFTF AVVPPLQMRV MTAAIEAPGL ASSINVGAFN LGNAVGAALG GAVISLNLGY AAVPMAGGVL AAAGLLLVWL GGRHKVAGKT AADMA
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