| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3289 |
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| Symbol | |
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| ID | 5194144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3700613 |
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| End bp | 3701461 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640587736 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001268599 |
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| Protein GI | 148548497 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.618073 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGC AAGCCATCCT CGCCGGCCTG ATCGGCCGCG GCATCCAACT GTCACGTACG
CCGGCCCTGC ACGAACACGA AGGCGACGCC CAGGCCCTGC GCTACCTGTA CCGGCTGATC
GACGCCGACC AGCTGCAACT GGACGACAGC GCCCTGCCCG GCCTGCTCGA AGCCGCGCAA
CATACCGGTT TCACCGGGCT GAACATTACG TACCCGTTCA AGCAGGCGAT CCTGCCGTTG
CTCGACGAAC TGTCCGACGA GGCCCGCGGT ATCGGCGCGG TAAATACCGT GGTGCTCAAG
GACGGCAAGC GCGTCGGCCA CAACACCGAT TGCCTGGGCT TTGCCGAAGG CTTGCGCCGT
GGCCTGCCCG ACGTTGCACG GCGCCAGGTG GTGCAGATGG GTGCCGGTGG CGCTGGCTCG
GCCGTGGCCC ATGCCCTGCT GGGTGAAGGG GTAGAGCGGC TGGTGCTGTT CGAAGTGGAT
GCGACCCGTG CGCAGGCGCT GGTGGACAAC CTGAACACCC ATTTCGGCGC GGAGCGCGCC
GTGCTTGGCA CCGACCTGGC CACAGCACTG GCCGAAGCGG ACGGGCTGGT CAACACCACG
CCGGTGGGCA TGGCCAAGCT ACCGGGCACG CCACTGCCGG TGGCGTTGCT GCATCCCCGC
CTGTGGGTGG CAGAGATCAT CTACTTCCCG CTGGAGACCG AACTGCTGCG CGCGGCCCGG
GCACTGGGCT GCCGCACACT GGATGGCAGC TACATGGCGG TGTTCCAGGC GGTGAAGGCA
TTCGAGCTGT TCAGCGGGCG GCAGGCGGAT GCGGCGCGAA TGCAGGCACA CTTTGCCAGT
TTCACCTGA
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| Protein sequence | MSQQAILAGL IGRGIQLSRT PALHEHEGDA QALRYLYRLI DADQLQLDDS ALPGLLEAAQ
HTGFTGLNIT YPFKQAILPL LDELSDEARG IGAVNTVVLK DGKRVGHNTD CLGFAEGLRR
GLPDVARRQV VQMGAGGAGS AVAHALLGEG VERLVLFEVD ATRAQALVDN LNTHFGAERA
VLGTDLATAL AEADGLVNTT PVGMAKLPGT PLPVALLHPR LWVAEIIYFP LETELLRAAR
ALGCRTLDGS YMAVFQAVKA FELFSGRQAD AARMQAHFAS FT
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