Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3233 |
Symbol | |
ID | 5193508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 3642680 |
End bp | 3643702 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640587678 |
Product | alanine racemase |
Protein accession | YP_001268543 |
Protein GI | 148548441 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.16314 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.588082 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCAACCA TCAAAGACGT CGCGGCACTG GCGGGTATTT CCTACACCAC CGTGTCCCAT GTACTCAACA AGACCCGTCC GGTCAGCGAA CAGGTGCGGC TGAAGGTGGA AGCCGCCATT GTCGAACTGG ATTACGTGCC CAGTGCGGTG GCGCGCTCGC TGAAGGCGCG CAGCACGGCC ACCATCGGCC TGTTGGTGCC CAACAGCGTC AACCCGTACT TCGCCGAGCT GGCGCGGGGT ATCGAAGACG CCTGCGAGCG CAACGGCTAT TGCGTGATCC TGTGCAACTC CGACGACAAC CCGCAGAAGC AGCGCAGCTA CCTGCGCGTG CTGCTGGAAA AACGCATCGA CGGCCTGGTA GTGGCCTCGG TGGGCCAGGA CGACGACCTG CTGCAAAGCC TGGCCGGTGT GCGCACGCCA ATGGTCATCG TCGACCGTGA GCTGGAAGGC GTCGATGCCG ACCTGGTGCG CATTGACCAC GAGCAGGGGG CGTACCTGGC CACCCAGCAC CTGCTGGAGC TGGGCCATCG CGACGTCGCC TATATCGGCG GCCCCGCCGA AACCGGTGTT ACCCAGCTGC GCCTGAGCGG CTTCCGCCGT GCCATGGCCG AAGCCGGTGC GCCTGTGCTG GGCAGCCGTG TACTGCACTG CGACTTCACC AGCCCGGGTG GCCATGCAGC GGCGGCGCAG GTGCTGGAAG GCAAGCGGCC CTCGGCGATT TTTGCCGGCA ACGACATGAT CGGCTTTGGT GTGCTGCGCG CTGCCGCCGA ACGCAATATC AGCGTACCCG GCGAGCTGTC GGTGATCGGC TTCGACGACA TCGAACTGAG CCGCTACGTG TACCCACCAC TGACCACCGT GGGCCAGTCG ATCCGCGAGC TGGGCGAGAG CGCTGCCTCG TTGCTGCTGA CGCGTATCGC TACGCCCCGG CAAGGCGCGG CGGAGCAGCG TATCGTCGCC CCGCGTATCG TCTTGCGTGA ATCCACCGGG CCGCGCCCGG ACCTGTTCAA TGAATACCGC TAA
|
Protein sequence | MATIKDVAAL AGISYTTVSH VLNKTRPVSE QVRLKVEAAI VELDYVPSAV ARSLKARSTA TIGLLVPNSV NPYFAELARG IEDACERNGY CVILCNSDDN PQKQRSYLRV LLEKRIDGLV VASVGQDDDL LQSLAGVRTP MVIVDRELEG VDADLVRIDH EQGAYLATQH LLELGHRDVA YIGGPAETGV TQLRLSGFRR AMAEAGAPVL GSRVLHCDFT SPGGHAAAAQ VLEGKRPSAI FAGNDMIGFG VLRAAAERNI SVPGELSVIG FDDIELSRYV YPPLTTVGQS IRELGESAAS LLLTRIATPR QGAAEQRIVA PRIVLRESTG PRPDLFNEYR
|
| |