| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3161 |
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| Symbol | |
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| ID | 5193303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | - |
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| Start bp | 3574749 |
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| End bp | 3576656 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640587607 |
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| Product | 4-hydroxyphenylpyruvate dioxygenase |
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| Protein accession | YP_001268473 |
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| Protein GI | 148548371 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases
[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR01263] 4-hydroxyphenylpyruvate dioxygenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.706766 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCGTT CGATCGCTAC CGTGTCCTTG AGCGGCACTC TGCCGGAAAA GCTCGAAGCC
ATCGCCGCCG CCGGTTTTGA CGGCGTCGAG ATCTTCGAGA ACGATCTGCT CTATTACGCT
GGCAGCCCGC GCCAGGTGCG CCAGATGTGC GCCGACCTGG GCATTGCCAT CACCTTGTTC
CAGCCTTTCC GCGACTTTGA AGGCTGCCGC CGTGACCGCC TGCAGAAAAA CCTCGACCGC
GCCGAACGCA AGTTCGACCT GATGCAGGAA CTGGGTACCG ACCTGGTGCT GGTGTGCAGC
AACGTCCAGG CCGATGCCCT GGGTGACGAG CAACTGTTGG TCGACGACCT GCGCCTGCTG
GGCGAACATG CCGGCAAGCG TGGCCTGCGC ATTGGTTACG AAGCGCTGGC CTGGGGCCGC
CACGTCAACA CTTACCAGCA AGTGTGGAAC CTGGTGCGCC AGGCCGACCA CCCGGCACTC
GGGGTGATCC TCGACAGCTT CCACACCTTG TCGCTCAAAG GTGACCCCAG CGCGATCCGC
GACATCCCCG GCGACAAGAT TTTCTTCGTG CAAATGGCCG ATGCGCCGAT CCTGGCCATG
GATGTGCTGG AGTGGAGCCG CCACTTTCGC TGCTTCCCGG GGCAGGGCGA AATGGACATG
GCCGGTTTCC TGGCGCCGAT CCTCGCCACG GGTTACCGTG GCCCGCTGTC GCTGGAAATC
TTCAACGACG GCTTCCGCGC CGCACCGACT CGGCAGAATG CCGCCGACGG CTTGCGTTCG
CTGCTGTACC TCGAAGAGCA GACCCGCTTG CGCCTGGAGC AGGAAAACAC GCCGATCGAA
CCTGGCGTGC TGTTCTCCCC GCCGCCGGCC AGCGCTTATG ACGGCGTGGA GTTCCTGGAG
TTCGCGGTCG ACGAAGCCGT CGGCGCGCGC CTGGGCAACT GGCTGAAGCG CCTGGGCTTT
GCCGAAGCCG GCAAGCATCG CAGCAAAGAA GTGCAACTGC TGCGCCAGGG GGATATCAAC
ATTGTGCTGA ACGCCGAACC GTATTCCTTT GGCCACAACT TCTTCGAGGC CCATGGCCCG
TCGCTGTGCG CCACTGCGCT GCGGGTCAAG GACCAGCAAG CGGCCCTGAA GCGGGCCACC
GCCTTCCGTG GCCAGCCGTT CCGCGGCCTG GTCGGTCCCA ATGAATGCGA AGTGCCGGCG
GTGCGTGCGC CCGATGGCAG CCTGCTGTAC CTGGTAGAGC AGGGCACTGC CGGCCACACC
CTGTACGACA CCGACTTCAG CCTGGACAAC AACGCAACCG CGACCGGCGG CCTGCGCCGC
ATCGACCACA TGGCGCTGGC CTTGCCGGCC GAGTCGCTGG ACAGCTGGGT GCTGTTCTAC
AAGAGCTTGT TCGACTTCGC CGCCGACGAC GAAGTGGTGC TGCCCGACCC GTATGGCCTG
GTCAAGAGCC GCGCCCTGCG CAGCCAGTGC GGCACCTTGC GCCTGCCGCT GAACATCTCG
GAAAACCGCA ACACCGCCAT CGCCCATGCG CTGTCAAGCT ACCGTGGTTC GGGCGTGCAT
CACATCGCTT TCGATTGTGA CGACATCTTC CGTGAAGTGG CGCGGGCCAA GCTGGCAGGG
GTACCGCTGC TGGAAATCCC GCTGAACTAT TACGACGACC TGGCGGCGCG TTTCGATTTC
GACGACGAGT TCCTCAGCGA ACTGGCGTAC TACAACGTGC TGTACGACCG TGACGCTCAA
GGTGGCGAGC TGTTCCACGT GTATACCGAG CCGTTCGAGG AGCGTTTCTT CTTCGAGATC
ATCCAGCGCA AGGCGGGGTA CGCCGGTTAC GGCGCTGCCA ACGTTGCGGT GCGCCTGGCA
GCCATGGCCA AGGCTCGAAG CGGAGCGGCG CGCAAGCCGG TGCTGTAG
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| Protein sequence | MQRSIATVSL SGTLPEKLEA IAAAGFDGVE IFENDLLYYA GSPRQVRQMC ADLGIAITLF
QPFRDFEGCR RDRLQKNLDR AERKFDLMQE LGTDLVLVCS NVQADALGDE QLLVDDLRLL
GEHAGKRGLR IGYEALAWGR HVNTYQQVWN LVRQADHPAL GVILDSFHTL SLKGDPSAIR
DIPGDKIFFV QMADAPILAM DVLEWSRHFR CFPGQGEMDM AGFLAPILAT GYRGPLSLEI
FNDGFRAAPT RQNAADGLRS LLYLEEQTRL RLEQENTPIE PGVLFSPPPA SAYDGVEFLE
FAVDEAVGAR LGNWLKRLGF AEAGKHRSKE VQLLRQGDIN IVLNAEPYSF GHNFFEAHGP
SLCATALRVK DQQAALKRAT AFRGQPFRGL VGPNECEVPA VRAPDGSLLY LVEQGTAGHT
LYDTDFSLDN NATATGGLRR IDHMALALPA ESLDSWVLFY KSLFDFAADD EVVLPDPYGL
VKSRALRSQC GTLRLPLNIS ENRNTAIAHA LSSYRGSGVH HIAFDCDDIF REVARAKLAG
VPLLEIPLNY YDDLAARFDF DDEFLSELAY YNVLYDRDAQ GGELFHVYTE PFEERFFFEI
IQRKAGYAGY GAANVAVRLA AMAKARSGAA RKPVL
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