| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3157 |
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| Symbol | |
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| ID | 5190814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 3570223 |
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| End bp | 3571551 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640587603 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001268469 |
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| Protein GI | 148548367 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.262509 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGCC CATGCCTGAT GGTGTGCCTG CTGGGAGTTG CCGTACAGGC CAGTGCCATG
GACCTGAAGC AAGCCTGGGA CCTGTTGCAG TACCAGGGCC CGGTCTACCG CGCTGCCGTG
CATGAAAAAC AAGCCGGTGG CGAAAACCGC GCCATCGGCG AGGCCGGCCT GCTGCCGCAG
ATCAACGCCT CGGCCTACTT CAACCAGGTC AATGGCAGCC AGCGCCAGAA TGGCCAGGAC
AATGACCTCG ACTATGACTC CAAGGGCGCC AACGTGCGCC TGCGCCAGCC GCTGTTCAAC
AAGCAGAAGA TGGCCGAGTA CCGCCAGGGC CAGCAACGCG CCGACTACAG CGTGGCGGTG
TTCGATGCCA AGAGCCAGGA CGCAGCGGTG CGCCTGGCCG ACGCTTACTT CGACGTGCTG
CTGGCCAGCG AAACCATCAC CCTGGCCAAG GCCAAGCTGA ACGCGTTCGA GGAGCAGCTG
GCATCGGCGA AGCGGCGCAA GGAACTGGGC GCCGGCACCA TCACCGACGT CGACGAGTCG
GTGGCCCGGC GCGACCTGGC CGAGGCCGAC CTGATCGACG CCCAGGACAA CCTGGTCAAC
GCCCGGCGCA AGCTGGAGGA ATACATTGGT GAAACCCCGC AGGCGTTGAC CACCCTGCAG
GCGGGCTTCA GCACCCCGCC GCTGATGCCG GGCAACCTGC AGGAGTGGCT GGTCAAAGCC
CAGGCTGACA GCCCGCTGAT TCATGCGCGC CGGCACAGCT ACGCGCTGGC CGAGGAAGAA
GTCAACCGCG CCCGCGCCGG GCATTACCCG ACCTTGGATT TCGTGGCGGG TTACACCGCA
GGCAGCAGCC AGTCGATTTC CGAGCTGAAC CAGCGCAACC ACTACAGCTC GATCGGGCTG
GAGCTGAACA TCCCGCTGTA CAGCGGTGGC AGCACCCGTG CCCTGACCCG CCAGGCCAGC
GCCAACAGCG CCAAGGCCCT GGATGAGCTG GACGCCACTC GCCAGGAGGT GATTTCCAAC
ACGACCCGCG AATACCGTGG CGTACAGAGT GGCGCCCTGC GCATTCAGGC ACTGGAGAAG
GCCGTGACCT CCAACGAGCG TTCGCTGACC TCGACCCGCA AGGGCTTCAA GGAAGGTGGC
ACCAGCACCA ACTCGGATGT GCTCAATGCC GAGGAGCTGC TGTATGACGC CCGCCATGAT
CTGTTCGAGG CCAAGCTCAA CTACCTGATG TCGCGCCTGC GGCTGGCCTC GTCGGTGGGC
AGCCTGGGGG ATGATGATAT CGAGCAGATC AATGATTACC TGGGGCCGGA GCTGATAGTC
AGCAATTGA
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| Protein sequence | MKRPCLMVCL LGVAVQASAM DLKQAWDLLQ YQGPVYRAAV HEKQAGGENR AIGEAGLLPQ
INASAYFNQV NGSQRQNGQD NDLDYDSKGA NVRLRQPLFN KQKMAEYRQG QQRADYSVAV
FDAKSQDAAV RLADAYFDVL LASETITLAK AKLNAFEEQL ASAKRRKELG AGTITDVDES
VARRDLAEAD LIDAQDNLVN ARRKLEEYIG ETPQALTTLQ AGFSTPPLMP GNLQEWLVKA
QADSPLIHAR RHSYALAEEE VNRARAGHYP TLDFVAGYTA GSSQSISELN QRNHYSSIGL
ELNIPLYSGG STRALTRQAS ANSAKALDEL DATRQEVISN TTREYRGVQS GALRIQALEK
AVTSNERSLT STRKGFKEGG TSTNSDVLNA EELLYDARHD LFEAKLNYLM SRLRLASSVG
SLGDDDIEQI NDYLGPELIV SN
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