Gene Pput_3004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3004 
Symbol 
ID5191742 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp3394742 
End bp3395623 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content65% 
IMG OID640587450 
Productinner-membrane translocator 
Protein accessionYP_001268316 
Protein GI148548214 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.961727 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTCT TCCTGGAAAC CTTGATCGGC GGCTTGCTCG CCGGCACCCT GTATTCGCTG 
GTGGCCATCG GCTTCGTGCT GATCTACAAG GCCAGCGGCG TGTTCAACTT CGCCCAGGGC
GCGATGCTGC TGTTTGCTGC GCTGACCTTC GTCAGCCTGC ACGAGCAGGG CCTGCCGTTC
GCCCTGGCGT TGGCCCTGAC TGTATTGGTG ATGATCGTCG GCGCGCTGCT GATCGAGCGC
CTGGTGCTGC GGCCCCTGGT CAATCGCTCG CAGATCACCC TGTTCATGGC CACCCTTGGC
CTGTCGTTCA TCATCGAGGG CCTGGCCCAG GGCTTGATGG GCGCCCAGGT ACGCGCGCTG
GATCTGGGCA TCGAGGACGT CCCGCTGTTC GTCGGCGAAC TGATGATCAG CCAGTTCGAC
CTGGTTGCCT CCGGCGTTTC CGCCTTGTTG GTGGCGGTGC TGGCGCTGCT GTTCAACAAG
ACCCGCATCG GTGTGGCCTT GCGGGCGGTG GCCGACGATA CCCGCGCGGC GCTGTCGCTG
GGCATCAACC TCAACCGCAT CTGGCAGATC GTCTGGGCCG TGGCCGGAAT GGTCGGGCTG
GTGGCCGGGC TGCTCTGGGG GGCGCGTCAG GGCGTGCAGT TCTCGCTCTC GCTGGTCGTG
CTCAAGGCGC TGCCGGTGCT GATCATCGGC GGCTTCACCT CGATTGGCGG AGCCATCGTC
GGCGGGCTGA TCGTCGGTGC CGCCGAGAAC CTCGCCGAAG CCTACATAGG CCCGCTGATC
GGCGGAGGCA TCACGCCCTG GTTCGCTTAT TTCCTTGCCC TGATCTTCCT ATACATCCGT
CCGGCCGGCC TGTTCGGCGA CCGGACCACC GAACGGGTAT GA
 
Protein sequence
MNFFLETLIG GLLAGTLYSL VAIGFVLIYK ASGVFNFAQG AMLLFAALTF VSLHEQGLPF 
ALALALTVLV MIVGALLIER LVLRPLVNRS QITLFMATLG LSFIIEGLAQ GLMGAQVRAL
DLGIEDVPLF VGELMISQFD LVASGVSALL VAVLALLFNK TRIGVALRAV ADDTRAALSL
GINLNRIWQI VWAVAGMVGL VAGLLWGARQ GVQFSLSLVV LKALPVLIIG GFTSIGGAIV
GGLIVGAAEN LAEAYIGPLI GGGITPWFAY FLALIFLYIR PAGLFGDRTT ERV